View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_279 (Length: 207)
Name: NF6874A_low_279
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_279 |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 4e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 31 - 188
Target Start/End: Complemental strand, 39080906 - 39080749
Alignment:
| Q |
31 |
agagatgtgaaatgggatgagatcatttaaagagattgagaattgagggtagaactcaagaaaaattatattaaaattgatgatgatcagtgatacaact |
130 |
Q |
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| T |
39080906 |
agagatgtgaaatgggatgaaatcatttaaagagattgagaattgagggtagaactcaagaaaaattatattaaaattgataatgatcagtgatacaact |
39080807 |
T |
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| Q |
131 |
atatacaaggatataatatatatttagagcttattaggaacctaatacataaagacct |
188 |
Q |
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| T |
39080806 |
atatacaaggatataatatatatttagagcttattaggaacataatacataaagacct |
39080749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 31 - 133
Target Start/End: Complemental strand, 39090269 - 39090169
Alignment:
| Q |
31 |
agagatgtgaaatgggatgagatcatttaaagagattgagaattgagggtagaactcaagaaaaattatattaaaattgatgatgatcagtgatacaact |
130 |
Q |
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| T |
39090269 |
agagaggtgaaatggtaggaaatcatttaaagagattgagagttgagggtggaactcaagaaaaagtatattgaaattgatgatga--agtgatacaact |
39090172 |
T |
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| Q |
131 |
ata |
133 |
Q |
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||| |
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| T |
39090171 |
ata |
39090169 |
T |
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