View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_291 (Length: 203)
Name: NF6874A_low_291
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_291 |
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| [»] chr2 (4 HSPs) |
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| [»] chr1 (5 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr6 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 144; Significance: 6e-76; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 28 - 203
Target Start/End: Original strand, 38251820 - 38251995
Alignment:
| Q |
28 |
caccagattcggtaaaagctcaaacccctacggtcagacagtcaagatcaacaggctacaagccagtatagttaacacacaatccaaaaacaaaagaatc |
127 |
Q |
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|||||||||| |||||||||||||| |||| || |||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
38251820 |
caccagattcagtaaaagctcaaactcctatgggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatccaaaaacaaaagaatc |
38251919 |
T |
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| Q |
128 |
aagatttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggctactataacacaatt |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
38251920 |
aagatttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggctgctataacacaatt |
38251995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 28 - 203
Target Start/End: Complemental strand, 43157722 - 43157547
Alignment:
| Q |
28 |
caccagattcggtaaaagctcaaacccctacggtcagacagtcaagatcaacaggctacaagccagtatagttaacacacaatccaaaaacaaaagaatc |
127 |
Q |
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|||||||||| |||||||||||||| |||| || |||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
43157722 |
caccagattcagtaaaagctcaaactcctatgggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatccaaaaacaaaagaatc |
43157623 |
T |
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| Q |
128 |
aagatttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggctactataacacaatt |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
43157622 |
aagatttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggctgctataacacaatt |
43157547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 128 - 203
Target Start/End: Original strand, 38251996 - 38252072
Alignment:
| Q |
128 |
aagatttgttacacactctaaaattatgctagca-aaatagaaacgaacaaatgacagaggctactataacacaatt |
203 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
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| T |
38251996 |
aagatttgttacacactctaaaattatgctagcataaatagaaacgaacaaatgacagaggctgctataacacaatt |
38252072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 128 - 203
Target Start/End: Complemental strand, 43157546 - 43157470
Alignment:
| Q |
128 |
aagatttgttacacactctaaaattatgctagca-aaatagaaacgaacaaatgacagaggctactataacacaatt |
203 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
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| T |
43157546 |
aagatttgttacacactctaaaattatgctagcataaatagaaacgaacaaatgacagaggctgctataacacaatt |
43157470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 28 - 203
Target Start/End: Complemental strand, 11475146 - 11474971
Alignment:
| Q |
28 |
caccagattcggtaaaagctcaaacccctacggtcagacagtcaagatcaacaggctacaagccagtatagttaacacacaatccaaaaacaaaagaatc |
127 |
Q |
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|||||||||| |||||||||||||| |||| | |||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
11475146 |
caccagattcagtaaaagctcaaactcctataggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatccaaaaacaaaagaatc |
11475047 |
T |
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| Q |
128 |
aagatttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggctactataacacaatt |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
11475046 |
aagatttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggctgctataacacaatt |
11474971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 28 - 203
Target Start/End: Complemental strand, 11503186 - 11503011
Alignment:
| Q |
28 |
caccagattcggtaaaagctcaaacccctacggtcagacagtcaagatcaacaggctacaagccagtatagttaacacacaatccaaaaacaaaagaatc |
127 |
Q |
| |
|
|||||||||| |||||||||||||| |||| | |||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
11503186 |
caccagattcagtaaaagctcaaactcctattggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatccaaaaacaaaagaatc |
11503087 |
T |
|
| Q |
128 |
aagatttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggctactataacacaatt |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
11503086 |
aagatttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggctgctataacacaatt |
11503011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 128 - 203
Target Start/End: Complemental strand, 11474970 - 11474894
Alignment:
| Q |
128 |
aagatttgttacacactctaaaattatgctagca-aaatagaaacgaacaaatgacagaggctactataacacaatt |
203 |
Q |
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|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
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| T |
11474970 |
aagatttgttacacactctaaaattatgctagcataaatagaaacgaacaaatgacagaggctgctataacacaatt |
11474894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 128 - 203
Target Start/End: Complemental strand, 11503010 - 11502934
Alignment:
| Q |
128 |
aagatttgttacacactctaaaattatgctagca-aaatagaaacgaacaaatgacagaggctactataacacaatt |
203 |
Q |
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|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
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| T |
11503010 |
aagatttgttacacactctaaaattatgctagcataaatagaaacgaacaaatgacagaggctgctataacacaatt |
11502934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 28245195 - 28245236
Alignment:
| Q |
162 |
aaatagaaacgaacaaatgacagaggctactataacacaatt |
203 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
28245195 |
aaatagaaacaaacaaatgacagaggctgctataacacaatt |
28245236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 22490436 - 22490477
Alignment:
| Q |
162 |
aaatagaaacgaacaaatgacagaggctactataacacaatt |
203 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
22490436 |
aaatacaaacgaacaaatgacagaggctgctataacacaatt |
22490477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 10123422 - 10123463
Alignment:
| Q |
162 |
aaatagaaacgaacaaatgacagaggctactataacacaatt |
203 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
10123422 |
aaatagaaacgaacaaatgatagaggctgctataacacaatt |
10123463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 19306850 - 19306891
Alignment:
| Q |
162 |
aaatagaaacgaacaaatgacagaggctactataacacaatt |
203 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||||| |
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|
| T |
19306850 |
aaatagaaacgaacaaatgatagaggctgctataacacaatt |
19306891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 25382990 - 25382949
Alignment:
| Q |
162 |
aaatagaaacgaacaaatgacagaggctactataacacaatt |
203 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
25382990 |
aaatagaatcgaacaaatgacagaggctgctataacacaatt |
25382949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 48795569 - 48795528
Alignment:
| Q |
162 |
aaatagaaacgaacaaatgacagaggctactataacacaatt |
203 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||| |
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|
| T |
48795569 |
aaatagaaacgaacaaatgacagaggttgttataacacaatt |
48795528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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