View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6874A_low_293 (Length: 201)
Name: NF6874A_low_293
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_293 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 124; Significance: 5e-64; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 23 - 154
Target Start/End: Original strand, 45037360 - 45037491
Alignment:
| Q |
23 |
acaatcttgttcttgctatgttatggcgtcatcctgaaaatgttgagcttcataaagtcaaggttgttcactattgtgcagcggtaagtaatggaatgca |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
45037360 |
acaatcttgttcttgctatgttatggcgtcaccctgaaaatgttgagcttcataaagtcaaggttgttcactattgtgcagcggtaagtaatgcaatgca |
45037459 |
T |
|
| Q |
123 |
tattttgatttattgattgtgtgaataaattt |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
45037460 |
tattttgatttattgattgtgtgaataaattt |
45037491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 46 - 101
Target Start/End: Complemental strand, 45944078 - 45944023
Alignment:
| Q |
46 |
tggcgtcatcctgaaaatgttgagcttcataaagtcaaggttgttcactattgtgc |
101 |
Q |
| |
|
|||||||||||||| |||||||||||| | ||||| | ||||||||||||||||| |
|
|
| T |
45944078 |
tggcgtcatcctgagaatgttgagcttgagaaagttcaagttgttcactattgtgc |
45944023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 20395277 - 20395365
Alignment:
| Q |
23 |
acaatcttgttcttgctatgttatggcgtcatcctgaaaatgttgagcttcataaagtcaaggttgttcactattgtgcagcggtaagt |
111 |
Q |
| |
|
|||||||||| || || ||||| |||||||||||||| |||||||| ||| | |||||||| |||||||| || ||||||||||||||| |
|
|
| T |
20395277 |
acaatcttgtgctggccatgttgtggcgtcatcctgagaatgttgaacttgagaaagtcaaagttgttcattactgtgcagcggtaagt |
20395365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 37686983 - 37686915
Alignment:
| Q |
40 |
atgttatggcgtcatcctgaaaatgttgagcttcataaagtcaaggttgttcactattgtgcagcggta |
108 |
Q |
| |
|
||||| |||||||| ||||| |||||||| ||| | |||||||| |||||||| || |||||||||||| |
|
|
| T |
37686983 |
atgttgtggcgtcaccctgagaatgttgaacttgagaaagtcaaagttgttcattactgtgcagcggta |
37686915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 37698535 - 37698603
Alignment:
| Q |
40 |
atgttatggcgtcatcctgaaaatgttgagcttcataaagtcaaggttgttcactattgtgcagcggta |
108 |
Q |
| |
|
||||| |||||||| ||||| |||||||| ||| | |||||||| |||||||| || |||||||||||| |
|
|
| T |
37698535 |
atgttgtggcgtcaccctgagaatgttgaacttgagaaagtcaaagttgttcattactgtgcagcggta |
37698603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University