View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_294 (Length: 201)
Name: NF6874A_low_294
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_294 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 4e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 14 - 177
Target Start/End: Original strand, 37809086 - 37809249
Alignment:
| Q |
14 |
gaataatataaagttgaagatgatccactctcttccgacggaaatgcaaatcgagaactataagcaacgaatgtcttgttttcagcttgttcttctatct |
113 |
Q |
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| T |
37809086 |
gaataatataaagttgaagatgacccactctcttccgacggaaatgcaaatcgagaactataagcaacgaatgtcttgttttcagcttgttcttctatct |
37809185 |
T |
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| Q |
114 |
catgattcccttctactaccattacagggacactggaaatcaatggttccatgtacctgaataa |
177 |
Q |
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| T |
37809186 |
catgattcccttctactaccattaccgggacactggaaatcaatggttccatgtacctgaataa |
37809249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 14 - 175
Target Start/End: Original strand, 37816500 - 37816661
Alignment:
| Q |
14 |
gaataatataaagttgaagatgatccactctcttccgacggaaatgcaaatcgagaactataagcaacgaatgtcttgttttcagcttgttcttctatct |
113 |
Q |
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|||||||| ||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37816500 |
gaataatagaaagtggatgatgatccactctcttctgacggaaatgcaaatcgagaactataagcaacgaatgtcttgttttcagcttgttcttctatct |
37816599 |
T |
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| Q |
114 |
catgattcccttctactaccattacagggacactggaaatcaatggttccatgtacctgaat |
175 |
Q |
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| T |
37816600 |
catgattcccttccactaccattattgggacactagcaatcagaggttccatgtacctgaat |
37816661 |
T |
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