View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_37 (Length: 359)
Name: NF6874A_low_37
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_37 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 37 - 359
Target Start/End: Complemental strand, 16691961 - 16691639
Alignment:
| Q |
37 |
aacctgtggctgagagaatttttcattctagttttattcttttaagaagaatatttggaaaattggcaaaagaaaaatttaatgttatgatggcatagtt |
136 |
Q |
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| T |
16691961 |
aacctgtggttgagagaattatttattctagttttattcttttaggaagaatatttggaaaattggcaaaagaaaaatt-aatgttatgatggcatagtt |
16691863 |
T |
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| Q |
137 |
tgattt-acatgtagagtaataagataaggtggaacatctagtgatttgatccaaattgcagaatataataatattttaacatttaagatgaaaatacaa |
235 |
Q |
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| T |
16691862 |
tgattttacatgtagagtaataagataaggtggaacatctagtgatttgatccaaattgcagaatataataatattttaacatttaagatgaaaatacaa |
16691763 |
T |
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| Q |
236 |
tttcttatctttctttgttcttcttcattatccacaatatactctttacttttactgtatgaaagttcttttgttactggtggaggatgttcaagaatag |
335 |
Q |
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| T |
16691762 |
tttcttatctttctttgttcttcttcattatccacaatatactctttacttttactgtatgaaagttcttttgttactggtggaggatgttcaagaatag |
16691663 |
T |
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| Q |
336 |
aataaaccttatactgcacatttt |
359 |
Q |
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| T |
16691662 |
aataaaccttatactacacatttt |
16691639 |
T |
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