View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_40 (Length: 356)
Name: NF6874A_low_40
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_40 |
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| [»] chr3 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 5 - 356
Target Start/End: Complemental strand, 29056524 - 29056173
Alignment:
| Q |
5 |
tagattattctcagaagctacttgaaacagtttctcatttgaaaccttttttaaattcttttcagattctcatttttgtacgaatctgccacaaatggct |
104 |
Q |
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| T |
29056524 |
tagattattctcagaagctacttgaaacagtttctcatttgaaacattttttaaattattttcagattctcatttttgtaagaatctgcaacaaatggat |
29056425 |
T |
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| Q |
105 |
gaaaattttgaaaagtgattttgcataatctaagctgtaacaaacaggctctttatatttgttgttggtttcattattgttttttacaaaatatgccgta |
204 |
Q |
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| T |
29056424 |
gaaaattttgaaaagtgattttgtacaatataagctgtaacaaacaggctctttatatttgttgttggtttcattattgttttttacaaaatatgccgta |
29056325 |
T |
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| Q |
205 |
aaaacaggctctttatatttgttattggtttcatgattgttttttcaatgcatgggtcattgatcgaagtggagaagcacagtatgttgagtggagtaag |
304 |
Q |
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| T |
29056324 |
aaaacaggctctttatatttgttattggtttcatgattgttttttcaatgcatgggtcattgatcgaagtggagaagcacagcatgttgagtggagtaag |
29056225 |
T |
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| Q |
305 |
atccaaacgcctactgatgaagtggttgtaccttatgacagtttggcaccaa |
356 |
Q |
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| T |
29056224 |
atccaaacgcctactgatgaagtggttgtaccttatgacagtttggcaccaa |
29056173 |
T |
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Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 272 - 356
Target Start/End: Original strand, 32848736 - 32848820
Alignment:
| Q |
272 |
agtggagaagcacagtatgttgagtggagtaagatccaaacgcctactgatgaagtggttgtaccttatgacagtttggcaccaa |
356 |
Q |
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| T |
32848736 |
agtggtgaagcgcagcatgtagaatggagtaagatccagacgccaactgatgaagttgttgtgccttatgatactttggcgccaa |
32848820 |
T |
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