View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_41 (Length: 353)
Name: NF6874A_low_41
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_41 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 7 - 353
Target Start/End: Original strand, 7447137 - 7447495
Alignment:
| Q |
7 |
tttggtgttgataacggatatgatgatcacgtatttttcatggctaatgaaacatgttactacaatggcatggaatggataagtttgtact--------- |
97 |
Q |
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| T |
7447137 |
tttggtgttgataacggatatgatgacgacgtatttttcatgcccaatgaaacatgttactacaatggcatggaatggataagtttgtacatgtagaaga |
7447236 |
T |
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| Q |
98 |
------aattaagaatatattagtaataataatattgcatttgtacataatgtgaatgatcccaatatgtaaattaattgtttgctattagctagtgtgt |
191 |
Q |
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| T |
7447237 |
aaaaaaaaaaaagaatatattagtaataata---tagcatttgtacataatgtgaatgatcccaatatgtaaattaattgtttgctactagctagtgtgt |
7447333 |
T |
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| Q |
192 |
ttatttaactatgatttgggaacatatatatccattaacataatgattttcattttgactccaaatcgtatggtatccactactttagtttttgtcacct |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
7447334 |
ttatttaactatgatttgggaacatatatatccattaacataatgattttcattttgactccaaatggtatggtatccactactttagtttttgtcacct |
7447433 |
T |
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| Q |
292 |
tctataagatgtatatattcatgtgtcgtgtgttttaagctcatcaaattatcaatgctata |
353 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7447434 |
tctataagatgtatatattcatgtgtcgtgtgttttaagctcatcaaattatcaatgctata |
7447495 |
T |
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