View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_5 (Length: 521)
Name: NF6874A_low_5
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 10 - 499
Target Start/End: Complemental strand, 48322656 - 48322167
Alignment:
| Q |
10 |
aaaagaaaatataaatttgaatatgatagaggaaaacaaagatgggttggagaagattttggtaaagccagtacacagattggaaagagagaagttgcag |
109 |
Q |
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| T |
48322656 |
aaaagaaaatataaatttgaatatgatagaggaaaacaaagatgggttggagaagattttggtaaagccagtacacagattggaaagagagaagttgcag |
48322557 |
T |
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| Q |
110 |
gttttatcacagggaagccgggttgaaaactacagacagagaaagagtcatggtgcaactaatgtggcagattgtgagagtttggataaagttttggtta |
209 |
Q |
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| T |
48322556 |
gttttatcacagggaagccgggttgaaaactacagacaaagaaagagtcatggtgcaactaatgtggcagattgtgagagtttggataaagttttggtta |
48322457 |
T |
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| Q |
210 |
agcgcgtatctagactagagaaggagaaaatcaatatcggggatgaatggggcgaagttaagaaaagtttccgaaacgaccgtttgcagacaaatgaaga |
309 |
Q |
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| T |
48322456 |
agcgcgtatctagactggagaaggagaaaatcaatatcggggatgaatggggcgaagttaagaaaagtttccgaaacgaccgtttgcagacaaatgaaga |
48322357 |
T |
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| Q |
310 |
aggtggtggtctggaccaagttttggttaaacataaacccagacttgagagggaaaagatggctgctgctgctcaacagcaagataatccaattagtttt |
409 |
Q |
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| T |
48322356 |
aggtggtggtctggaccaagttttggttaaacataaacccagacttgagagggaaaagatggctgctgctgctcaacagcaagataatccaattagtttt |
48322257 |
T |
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| Q |
410 |
tctgtggctcgacgcaaggcaagggagagagaattggaagaagcctggggaggactgagcttaggaaactccatgaagcctagtgtctcc |
499 |
Q |
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| T |
48322256 |
tctgtggctcgacgcaaggctagggagagagagttggaagaagcctggggaggactgagcttaggaaactccatgaagcctagtgtctcc |
48322167 |
T |
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