View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6874A_low_50 (Length: 334)
Name: NF6874A_low_50
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_50 |
 | |
|
| [»] chr2 (4 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 20 - 334
Target Start/End: Complemental strand, 5827291 - 5826977
Alignment:
| Q |
20 |
gttgcctcatcaagtaaaagtattctagggtttttcaatatagctcttgcaattgctatacgttgtttttgtccacctgataactgtgtgcctctttcgc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5827291 |
gttgcctcatcaagtaaaagtattctagggtttttcaatatagctcttgcaattgctatacgttgtttttgtccacctgataactgtgtgcctctttcgc |
5827192 |
T |
|
| Q |
120 |
ctaccgatgtattgtaaccacctggaagagagcttataaagttgtgtgcattggctgcgttagctgctgcaattatctcatcctccgtagcacctccttc |
219 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5827191 |
ctaccgaagtattgtaaccacctggaagagagcttatgaagttgtgtgcattggctgcgttagctgctgcaattatctcatcctccgtagcacctccttc |
5827092 |
T |
|
| Q |
220 |
tttgccataagctatgttggcacgaatgctttcggtgaaaagaataggctcttgaccaaccaaacccatctgttgtctcaaccagcttagtttgaaagtt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5827091 |
tttgccataagctatgttggcacgaatgctttcgttgaaaagaataggctcttgaccaaccaaacccatttgttgtctcaaccagcttagtttgaaagtt |
5826992 |
T |
|
| Q |
320 |
ttgatattcagtcca |
334 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
5826991 |
ttgatattcagtcca |
5826977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 23 - 326
Target Start/End: Complemental strand, 5768835 - 5768532
Alignment:
| Q |
23 |
gcctcatcaagtaaaagtattctagggtttttcaatatagctcttgcaattgctatacgttgtttttgtccacctgataactgtgtgcctctttcgccta |
122 |
Q |
| |
|
||||| ||||| ||||||||| | |||||||||| || ||||||||||| || ||||| || || ||||| ||||||| ||||||||||||||| || | |
|
|
| T |
5768835 |
gcctcgtcaagcaaaagtattttggggtttttcagcatggctcttgcaatagcaatacgctgcttctgtcctcctgatagctgtgtgcctctttccccga |
5768736 |
T |
|
| Q |
123 |
ccgatgtattgtaaccacctggaagagagcttataaagttgtgtgcattggctgcgttagctgctgcaattatctcatcctccgtagcacctccttcttt |
222 |
Q |
| |
|
| || || | |||||| ||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5768735 |
cagaggtgtcataaccatttggaagagagcttatgaaattgtgtgcattggctgctttagctgctgcaattatctcatcctccatagcacctccttcttt |
5768636 |
T |
|
| Q |
223 |
gccataagctatgttggcacgaatgctttcggtgaaaagaataggctcttgaccaaccaaacccatctgttgtctcaaccagcttagtttgaaagttttg |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5768635 |
gccataagctatgttggcacgaatgctttcgttgaaaagaataggctcttgaccaaccaaacccatctgttgtctcaaccagcttagtctgaaagttttt |
5768536 |
T |
|
| Q |
323 |
atat |
326 |
Q |
| |
|
|||| |
|
|
| T |
5768535 |
atat |
5768532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 23 - 323
Target Start/End: Original strand, 5829613 - 5829913
Alignment:
| Q |
23 |
gcctcatcaagtaaaagtattctagggtttttcaatatagctcttgcaattgctatacgttgtttttgtccacctgataactgtgtgcctctttcgccta |
122 |
Q |
| |
|
||||||||||| ||||||||| | |||||||| | || | ||||||||| || || || || || ||||| || || | || ||||||||||| || | |
|
|
| T |
5829613 |
gcctcatcaagcaaaagtattttggggttttttagcatggttcttgcaatagcaatgcgctgcttctgtcctccggacagttgcgtgcctctttctccaa |
5829712 |
T |
|
| Q |
123 |
ccgatgtattgtaaccacctggaagagagcttataaagttgtgtgcattggctgcgttagctgctgcaattatctcatcctccgtagcacctccttcttt |
222 |
Q |
| |
|
| || || | || ||| |||||||| ||||| ||| |||||||||| |||||||||||||||||||| ||||||||||| |||||||| |||||||| |
|
|
| T |
5829713 |
cagacgtgtcatatccatctggaagattacttatgaagctgtgtgcatttgctgcgttagctgctgcaatgatctcatcctctgtagcacccccttcttt |
5829812 |
T |
|
| Q |
223 |
gccataagctatgttggcacgaatgctttcggtgaaaagaataggctcttgaccaaccaaacccatctgttgtctcaaccagcttagtttgaaagttttg |
322 |
Q |
| |
|
|||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||| | ||||||||||| |
|
|
| T |
5829813 |
tccataacctatgttagcacgaatgctttcgttgaaaagaataggctcttgaccaaccaaccccatttgttgtctcaaccagcttaatctgaaagttttg |
5829912 |
T |
|
| Q |
323 |
a |
323 |
Q |
| |
|
| |
|
|
| T |
5829913 |
a |
5829913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 5794883 - 5794793
Alignment:
| Q |
20 |
gttgcctcatcaagtaaaagtattctagggtttttcaatatagctcttgcaattgctatacgttgtttttgtccacctgataactgtgtgcctctttcg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5794883 |
gttgcctcatcaagtaaaagtattctagggtctttcaatatagctcttgca--------acattgtttttgtccacctggtaactgtgtgcctctttcg |
5794793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 20 - 326
Target Start/End: Original strand, 29327124 - 29327430
Alignment:
| Q |
20 |
gttgcctcatcaagtaaaagtattctagggtttttcaatatagctcttgcaattgctatacgttgtttttgtccacctgataactgtgtgcctctttcgc |
119 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||| || ||||||||||| || || || || || ||||| || |||| |||||||||||||||| |
|
|
| T |
29327124 |
gttgcctcatcaagcaaaagtattttagggtttttcagcatggctcttgcaatcgcaatgcgctgcttctgtcctccagatagttgtgtgcctctttcgc |
29327223 |
T |
|
| Q |
120 |
ctaccgatgtattgtaaccacctggaagagagcttataaagttgtgtgcattggctgcgttagctgctgcaattatctcatcctccgtagcacctccttc |
219 |
Q |
| |
|
| || || || | |||||| | |||||||| ||||| ||||||||||||||||||||||| |||||||| || |||||||||||||||||||| |||| |
|
|
| T |
29327224 |
caacagaagtgtcataaccatcaggaagagaacttatgaagttgtgtgcattggctgcgttcgctgctgctatgatctcatcctccgtagcaccatcttc |
29327323 |
T |
|
| Q |
220 |
tttgccataagctatgttggcacgaatgctttcggtgaaaagaataggctcttgaccaaccaaacccatctgttgtctcaaccagcttagtttgaaagtt |
319 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||| |
|
|
| T |
29327324 |
tttaccataagctatgttggcgcgaatgctttcgttgaaaagaataggctcttgaccaaccaaacccatttgttgtctcaaccagcttattctgaaagtt |
29327423 |
T |
|
| Q |
320 |
ttgatat |
326 |
Q |
| |
|
||||||| |
|
|
| T |
29327424 |
ttgatat |
29327430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 3431216 - 3431268
Alignment:
| Q |
50 |
tttttcaatatagctcttgcaattgctatacgttgtttttgtccacctgataa |
102 |
Q |
| |
|
|||||||| ||||||||||||||||| || | ||| ||||||||||| ||||| |
|
|
| T |
3431216 |
tttttcaacatagctcttgcaattgcaatcctttgcttttgtccaccagataa |
3431268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 17872391 - 17872447
Alignment:
| Q |
68 |
gcaattgctatacgttgtttttgtccacctgataactgtgtgcctctttcgcctacc |
124 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||| || | |||||||| |||||| |
|
|
| T |
17872391 |
gcaattgctattctttgtttttgtccacctgataattgaatccctctttctcctacc |
17872447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University