View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_51 (Length: 331)
Name: NF6874A_low_51
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_51 |
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| [»] chr4 (10 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 5e-81; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 179 - 331
Target Start/End: Complemental strand, 37180154 - 37180002
Alignment:
| Q |
179 |
tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37180154 |
tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct |
37180055 |
T |
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| Q |
279 |
acaaatattccaacaattccatctctcaacattccaccattgccagcagtcac |
331 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37180054 |
acaaatattccaacaattccatctctcaacattccaccattgccagcagtcac |
37180002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 179 - 331
Target Start/End: Original strand, 37181583 - 37181735
Alignment:
| Q |
179 |
tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37181583 |
tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct |
37181682 |
T |
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| Q |
279 |
acaaatattccaacaattccatctctcaacattccaccattgccagcagtcac |
331 |
Q |
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| T |
37181683 |
acaaatattccaacaattccatctctcaacattccaccattgccagcagtcac |
37181735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 179 - 331
Target Start/End: Original strand, 37189700 - 37189852
Alignment:
| Q |
179 |
tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct |
278 |
Q |
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| T |
37189700 |
tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct |
37189799 |
T |
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| Q |
279 |
acaaatattccaacaattccatctctcaacattccaccattgccagcagtcac |
331 |
Q |
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| T |
37189800 |
acaaatattccaacaattccatctctcaacattccaccattgccagcagtcac |
37189852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 183 - 327
Target Start/End: Complemental strand, 37187833 - 37187689
Alignment:
| Q |
183 |
ccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaa |
282 |
Q |
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| T |
37187833 |
ccttcaattccaaatatgcctcagggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttcctagctttcctacaa |
37187734 |
T |
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| Q |
283 |
atattccaacaattccatctctcaacattccaccattgccagcag |
327 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
37187733 |
attttccaacaattccatctctcaacattccaccattgccagcag |
37187689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 37180316 - 37180220
Alignment:
| Q |
20 |
catcaaactatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatcttttg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
37180316 |
catcaaactatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgccatcttttg |
37180220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 37189538 - 37189634
Alignment:
| Q |
20 |
catcaaactatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatcttttg |
116 |
Q |
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| T |
37189538 |
catcaaactatcaatggcaatattcaaatccttgatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgccatcttttg |
37189634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 38704268 - 38704220
Alignment:
| Q |
183 |
ccttcaattccaaatatgcctcaaggaaatcttcctccattgcctacta |
231 |
Q |
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| T |
38704268 |
ccttcaattccaaatatgcctcaaggaaatcttcctccattgcctacta |
38704220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 37181445 - 37181517
Alignment:
| Q |
44 |
caaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatcttttg |
116 |
Q |
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| T |
37181445 |
caaatccttcattgcaactttacttcttgttgtcacaatgtcaagcatgagcctagaagctcgccatcttttg |
37181517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 28 - 115
Target Start/End: Complemental strand, 37187988 - 37187901
Alignment:
| Q |
28 |
tatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatctttt |
115 |
Q |
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||||||||||| | |||||||||||||| | |||||||||| |||||||| || |||| |||||||||||||||||| |||||||| |
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| T |
37187988 |
tatcaatggcatcaagcaaatccttcatcatagctttacttcttgttgtgaccatgtcaagcatgagcctagaagctcgccatctttt |
37187901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 38704369 - 38704293
Alignment:
| Q |
44 |
caaatccttcatcacaactt----tacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatcttttg |
116 |
Q |
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| T |
38704369 |
caaatccttaatcacaacttaatttacttcttgttgtgacaatgtcaagcatgaacctagaagctcgtcatcttttg |
38704293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 201 - 319
Target Start/End: Original strand, 27096701 - 27096816
Alignment:
| Q |
201 |
cctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattccat |
300 |
Q |
| |
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|||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||| || ||||||| |||||| |
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| T |
27096701 |
cctcaaggtaatgttcctccattgcctactatcccttctatgcctaagctcactatgccaccacttcctagcattcctaccaa---tccaacacttccat |
27096797 |
T |
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| Q |
301 |
ctctcaacattccaccatt |
319 |
Q |
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|||||||| |||||||||| |
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| T |
27096798 |
ctctcaactttccaccatt |
27096816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 201 - 319
Target Start/End: Original strand, 27103004 - 27103119
Alignment:
| Q |
201 |
cctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattccat |
300 |
Q |
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|||||||| ||| |||||||||||||||| |||||||| ||||||| |||||||||||||||||||| || |||| || || ||||||| |||||| |
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| T |
27103004 |
cctcaaggtaatgttcctccattgcctaccatcccttcagtgcctaagctcactatgccaccacttcctagcattccaaccaa---tccaacacttccat |
27103100 |
T |
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| Q |
301 |
ctctcaacattccaccatt |
319 |
Q |
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|||||||| |||||||||| |
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| T |
27103101 |
ctctcaactttccaccatt |
27103119 |
T |
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