View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_55 (Length: 326)
Name: NF6874A_low_55
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_55 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 25 - 292
Target Start/End: Original strand, 28608940 - 28609207
Alignment:
| Q |
25 |
tgttggaggtcctgatgatcgcgaagcattagctgtcgcatggaggatgacaggacacttaggaacccaacttctagtggttcggatgctcttgtttggt |
124 |
Q |
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| T |
28608940 |
tgttggaggtcctgatgatcgcgaagcattatctgtcgcatggaggatgacaggacacttaggaacccaacttctagtggttcggatgctcctgtttggt |
28609039 |
T |
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| Q |
125 |
aaagctgcaatagtggacaccacaagtcatgataaagcaaggggcatattatctatggtaatggatagtgagaaacaaaaggaattagatgatgagtatg |
224 |
Q |
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| T |
28609040 |
aaagctgcaatagtggacaccacaagtcatgataaagcaaggggcatattatctattgtaatggatagtgagaagcaaaaggaattagatgatgagtatg |
28609139 |
T |
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| Q |
225 |
ttaatggatttagattgacaacgatgaacagcaatgattctatatcttattcagaagttgatgtccat |
292 |
Q |
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| T |
28609140 |
ttaatggatttagattgacaacgatgaacaacaatgattctatatcttattcagaagttgatgtccat |
28609207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 25 - 292
Target Start/End: Complemental strand, 437964 - 437697
Alignment:
| Q |
25 |
tgttggaggtcctgatgatcgcgaagcattagctgtcgcatggaggatgacaggacacttaggaacccaacttctagtggttcggatgctcttgtttggt |
124 |
Q |
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| T |
437964 |
tgttggtggtcctgatgatcgcgaagccttagctgttgcatggagaatggcaggacgcataggaacccaattatcagtggttcggatgctcctgtttgat |
437865 |
T |
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| Q |
125 |
aaagctgcaatagtggacaccacaagtcatgataaagcaaggggcatattatctatggtaatggatagtgagaaacaaaaggaattagatgatgagtatg |
224 |
Q |
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| T |
437864 |
aatgctgaaatagtagacacctcaagtcatgctgaaccacaagggatactatctattgtaatggatagtgagaagcagaaggagttagatgatgagtatg |
437765 |
T |
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| Q |
225 |
ttaatggatttagattgacaacgatgaacagcaatgattctatatcttattcagaagttgatgtccat |
292 |
Q |
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| T |
437764 |
tgaatggatttagattgacagcgatgaacaacaatgattctatatcttattcagaagttaatgtccat |
437697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 292
Target Start/End: Original strand, 13660453 - 13660578
Alignment:
| Q |
167 |
ggcatattatctatggtaatggatagtgagaaacaaaaggaattagatgatgagtatgttaatggatttagattgacaacgatgaacagcaatgattcta |
266 |
Q |
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| T |
13660453 |
ggcatattatctgttgtaatggataatgagaagcagaaggatctagacgaagaatatgtaaattcatttagactgaaagcagtgaataacaatgattcta |
13660552 |
T |
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| Q |
267 |
tatcttattcagaagttgatgtccat |
292 |
Q |
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| T |
13660553 |
tatcatattcggaggttgatgtccat |
13660578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 122
Target Start/End: Original strand, 13660313 - 13660408
Alignment:
| Q |
27 |
ttggaggtcctgatgatcgcgaagcattagctgtcgcatggaggatgacaggacacttaggaacccaacttctagtggttcggatgctcttgtttg |
122 |
Q |
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| T |
13660313 |
ttggaggtcctgatgatcatgaagccttagctgttgcatggaggatggtggggcacccaggaacccgattatcattggttcggatgctcttgtttg |
13660408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 292
Target Start/End: Original strand, 13652957 - 13653078
Alignment:
| Q |
171 |
tattatctatggtaatggatagtgagaaacaaaaggaattagatgatgagtatgttaatggatttagattgacaacgatgaacagcaatgattctatatc |
270 |
Q |
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| T |
13652957 |
tattatctgttgtaatggataatgagaagcagaaggatctagacgaagaatatgtaaattcatttagactgaaagcagtgaataacaatgattttatatc |
13653056 |
T |
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| Q |
271 |
ttattcagaagttgatgtccat |
292 |
Q |
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| T |
13653057 |
ctattcagaggttgatgtccat |
13653078 |
T |
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