View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_56 (Length: 326)
Name: NF6874A_low_56
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_56 |
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Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 7 - 302
Target Start/End: Complemental strand, 35275464 - 35275169
Alignment:
| Q |
7 |
cctacctctggtggtgacaccaatttagcaccctttgattctgtcactccaactaaatttgacaacaattattataaggaccttattgctaataaaggtc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35275464 |
cctacctctggtggtgacaccaatttagcaccctttgattctgtcactccaactaaatttgacaacaattattataaggaccttattgctaataaaggtc |
35275365 |
T |
|
| Q |
107 |
ttctacattctgatcaagttcttttcaatggtggtggttctcaaatttctttggttaggaagtatagtagagatggtgctgctttttctagagactttgc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35275364 |
ttctacattctgatcaagttcttttcaatggtggtggttctcaaatttctttggttaggaagtatagtagagatggtgctgctttttctagagactttgc |
35275265 |
T |
|
| Q |
207 |
tgctgctatggtgaagatgagtaaaattagtcctcttactgggactaatggtgagatcagaaagaattgcaggattgtgaattgattttggttttt |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35275264 |
tgctgctatggtgaagatgagtaaaattagtcctcttactgggactaatggtgagatcagaaagaattgcaggattgtgaattgattttggttttt |
35275169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 7 - 287
Target Start/End: Complemental strand, 35289576 - 35289296
Alignment:
| Q |
7 |
cctacctctggtggtgacaccaatttagcaccctttgattctgtcactccaactaaatttgacaacaattattataaggaccttattgctaataaaggtc |
106 |
Q |
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||||| ||||||||||||| ||||| ||||| ||||||||||| ||||| || |||||||||||||| ||||| |||||| ||||||||||||| | |
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| T |
35289576 |
cctacttctggtggtgacataaatttggcacctcttgattctgtctctccagttacttttgacaacaattactataatgaccttgttgctaataaaggac |
35289477 |
T |
|
| Q |
107 |
ttctacattctgatcaagttcttttcaatggtggtggttctcaaatttctttggttaggaagtatagtagagatggtgctgctttttctagagactttgc |
206 |
Q |
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|||| ||||||||||||| |||||||||||||| |||||||||| ||||||||||||||| ||||||||| || | ||||||| ||||||||||| |
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| T |
35289476 |
ttcttcattctgatcaagctcttttcaatggtgttggttctcaagtttctttggttaggacttatagtagaaataatattgcttttaaaagagactttgc |
35289377 |
T |
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| Q |
207 |
tgctgctatggtgaagatgagtaaaattagtcctcttactgggactaatggtgagatcagaaagaattgcaggattgtgaa |
287 |
Q |
| |
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|||||||||||||||||||||| |||||||||||| |||||||||||||| ||||| ||||||||||||||| ||||||| |
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| T |
35289376 |
agctgctatggtgaagatgagtagaattagtcctctaactgggactaatggggagattagaaagaattgcaggcttgtgaa |
35289296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 13 - 292
Target Start/End: Complemental strand, 35307368 - 35307092
Alignment:
| Q |
13 |
tctggtggtgacaccaatttagcaccctttgattctgtcactccaactaaatttgacaacaattattataaggaccttattgctaataaaggtcttctac |
112 |
Q |
| |
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|||||||||||||||||||||||||| ||||| || |||||||||| | ||||| |||||||| ||||| ||||| |||| | ||||||||| | | |
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| T |
35307368 |
tctggtggtgacaccaatttagcaccacttgatactctcactccaacaagttttgataacaattactataaaaaccttgttgcaagcaaaggtcttttcc |
35307269 |
T |
|
| Q |
113 |
attctgatcaagttcttttcaatggtggtggttctcaaatttctttggttaggaagtatagtagagatggtgctgctttttctagagactttgctgctgc |
212 |
Q |
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|||||||||||| |||||||||| ||| |||||| | ||||||||||| ||||||| |||||||| ||||||||||||||||||| | ||| |
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| T |
35307268 |
attctgatcaagctcttttcaataatggg---tctcaagataatttggttaggagttatagtaccaatggtgctactttttctagagactttgccgttgc |
35307172 |
T |
|
| Q |
213 |
tatggtgaagatgagtaaaattagtcctcttactgggactaatggtgagatcagaaagaattgcaggattgtgaattgat |
292 |
Q |
| |
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||||||||| ||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| |||||||||||| |
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| T |
35307171 |
tatggtgaaactgagtaaaattagtcctctaactgggactaatggggagattagaaagaattgcaggcttgtgaattgat |
35307092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 21 - 292
Target Start/End: Complemental strand, 35311703 - 35311435
Alignment:
| Q |
21 |
tgacaccaatttagcaccctttgattctgtcactccaactaaatttgacaacaattattataaggaccttattgctaataaaggtcttctacattctgat |
120 |
Q |
| |
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|||||||||||||||||| ||||| || |||||||||| | |||||||||||||||||||| ||||| |||| | |||||||| | ||||||||| |
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| T |
35311703 |
tgacaccaatttagcaccacttgatactctcactccaacaagttttgacaacaattattataaaaaccttgttgcaagcaaaggtctattccattctgat |
35311604 |
T |
|
| Q |
121 |
caagttcttttcaatggtggtggttctcaaatttctttggttaggaagtatagtagagatggtgctgctttttctagagactttgctgctgctatggtga |
220 |
Q |
| |
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||||| ||||||||| ||| |||||| | ||||||||||| ||||||| ||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
35311603 |
caagtccttttcaataatggg---tctcaagataatttggttaggagttatagtaccaatgaggctgctttttctacagactttgctgctgctatggtga |
35311507 |
T |
|
| Q |
221 |
agatgagtaaaattagtcctcttactgggactaatggtgagatcagaaagaattgcaggattgtgaattgat |
292 |
Q |
| |
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| |||||||||| |||||||| |||||||||||||| ||||||||||||||||| ||| |||||||||||| |
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| T |
35311506 |
aactgagtaaaatcagtcctctcactgggactaatggggagatcagaaagaattgtaggcttgtgaattgat |
35311435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 13 - 289
Target Start/End: Complemental strand, 35280225 - 35279949
Alignment:
| Q |
13 |
tctggtggtgacaccaatttagcaccctttgattctgtcactccaactaaatttgacaacaattattataaggaccttattgctaataaaggtcttctac |
112 |
Q |
| |
|
||||| |||||||| ||||| || || ||||||||||| |||| || ||||||||||||||||||| ||| || ||||||||||||| ||||| |
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| T |
35280225 |
tctggcggtgacacaaatttggctcctcttgattctgtctctcctgttacttttgacaacaattattatagggatctagttgctaataaaggacttctta |
35280126 |
T |
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| Q |
113 |
attctgatcaagttcttttcaatggtggtggttctcaaatttctttggttaggaagtatagtagagatggtgctgctttttctagagactttgctgctgc |
212 |
Q |
| |
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|||||||||||| ||||||||||||| |||||||| | |||||||||||||| ||||||| | ||||| ||||||| |||||||||||| ||| |
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| T |
35280125 |
attctgatcaagcacttttcaatggtgttggttctccagtttctttggttagggcttatagtataaatggttttgcttttagaagagactttgcttttgc |
35280026 |
T |
|
| Q |
213 |
tatggtgaagatgagtaaaattagtcctcttactgggactaatggtgagatcagaaagaattgcaggattgtgaatt |
289 |
Q |
| |
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||||||||||||||| | |||||||||||| || ||||||||||| || || |||||||||||||| ||||||||| |
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| T |
35280025 |
tatggtgaagatgagcagaattagtcctctcacagggactaatggggaaattagaaagaattgcagacttgtgaatt |
35279949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 13 - 292
Target Start/End: Complemental strand, 35322369 - 35322093
Alignment:
| Q |
13 |
tctggtggtgacaccaatttagcaccctttgattctgtcactccaactaaatttgacaacaattattataaggaccttattgctaataaaggtcttctac |
112 |
Q |
| |
|
|||||||||||||||||||||||||| |||| || |||||||||| || |||||||||||||| ||||| | ||| |||| | ||||||||| | | |
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| T |
35322369 |
tctggtggtgacaccaatttagcacctcttgacactctcactccaacaaattttgacaacaattactataaaaatcttgttgcaagcaaaggtcttttcc |
35322270 |
T |
|
| Q |
113 |
attctgatcaagttcttttcaatggtggtggttctcaaatttctttggttaggaagtatagtagagatggtgctgctttttctagagactttgctgctgc |
212 |
Q |
| |
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|||||||||||| |||||||||| ||| |||||| | ||||||||||| ||||||| |||||||| ||||| ||||||||||||| ||| |
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| T |
35322269 |
attctgatcaagctcttttcaataatggg---tctcaagataatttggttaggagttatagtaccaatggtgctacttttagaagagactttgctgttgc |
35322173 |
T |
|
| Q |
213 |
tatggtgaagatgagtaaaattagtcctcttactgggactaatggtgagatcagaaagaattgcaggattgtgaattgat |
292 |
Q |
| |
|
||||||||| |||||||||||| |||||| |||||||||||||| ||||| ||||||||||| ||| |||||||||||| |
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|
| T |
35322172 |
tatggtgaaactgagtaaaattaatcctctaactgggactaatggggagattagaaagaattgtaggcttgtgaattgat |
35322093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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