View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_7 (Length: 448)
Name: NF6874A_low_7
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 6 - 426
Target Start/End: Complemental strand, 3773392 - 3772970
Alignment:
| Q |
6 |
agaaacacagatcctcatcccatccaacaagaattgaattttcatcattcaattattggttttccataataaattgaattttgaataaaccacaacctct |
105 |
Q |
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| T |
3773392 |
agaaactcagatcttcatcccatccaacaagaattgaattttcatcattcaattattggttttctataataaattgaattttgaataaaccacaacctct |
3773293 |
T |
|
| Q |
106 |
ctattccatctaaattcattatttgattattgttttgcaaacccagttaatataattatgcaagtacgatggtttttcaatctaacaaacagtgaggtaa |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3773292 |
ctattccatctaaattcattatttgattattgttttgcaaacccagttaatataattatgcaagtacgatggtttttcaatctaacaaacagtgaggaaa |
3773193 |
T |
|
| Q |
206 |
agaaggnnnnnnnttgaatttttaattcgattattttttaactgtgatg--gtttttccaataaaaatagaaaatgcatatattcattnnnnnnnnnnnn |
303 |
Q |
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| T |
3773192 |
agaaggaaaaaaattgaatttttaattcgattattttttaactgtgatgttttttttccagtaaaaatagaaaatgcatatattcattaaaaacaaaaaa |
3773093 |
T |
|
| Q |
304 |
ntcaacccaaaaacgcggcgaggaggagaattcaatcaagaaacccagaaacgttggtgtaagatgtcgcagaaccacgtcttcgcctttgcataacgtt |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3773092 |
atcaacccaaaaacgcggcgaggaggagaattcaatcaagaaatccagaaacgttggtgtaagatgtcgcagaaccacgtctttgcctttgcataacgtt |
3772993 |
T |
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| Q |
404 |
tacgctgtcgtagcctccgacct |
426 |
Q |
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| T |
3772992 |
tacgctgtcgtagcctccgacct |
3772970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 6 - 426
Target Start/End: Original strand, 22966478 - 22966894
Alignment:
| Q |
6 |
agaaacacagatcctcatcccatccaacaagaattgaattttcatcattcaattattggttttccataataaattgaattttgaataaaccacaacctct |
105 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
22966478 |
agaaactcagatcctcatcccatccaacaagaattgaattttcatcattcagttattggttttctataataaattgaattttgaataaaccacaacctct |
22966577 |
T |
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| Q |
106 |
ctattccatctaaattcattatttgattattgttttgcaaacccagttaatataattatgcaagtacgatggtttttcaatctaacaaacagtgaggtaa |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||| |||| || |
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| T |
22966578 |
ctattccatctaaattcattatttgattattgttttgcaaacccagttaatataattatgcaaataccatggttttttaatctaacaaacagagaggaaa |
22966677 |
T |
|
| Q |
206 |
agaagg-nnnnnnnttgaatttttaattcgattattttttaactgtgatggtttttccaataaaaatagaaaatgcatatattcattnnnnnnnnnnnnn |
304 |
Q |
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| T |
22966678 |
agaaggaaaaaaaattgaatttttaattcgattattttttaactgtgatggtttttctaataaaagtagaaaatgcatatattcattaaaaacaaaaaaa |
22966777 |
T |
|
| Q |
305 |
tcaacccaaaaacgcggcgaggaggagaattcaatcaagaaacccagaaacgttggtgtaagatgtcgcagaaccacgtcttcgcctttgcataacgttt |
404 |
Q |
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| T |
22966778 |
tcaacccaaaaacgcggcgaggaggagaattcaatcaagaaacccagaaacgtt-gcataacgt----aagaaccacgtcttcgcctttgcataacgttt |
22966872 |
T |
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| Q |
405 |
acgctgtcgtagcctccgacct |
426 |
Q |
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||| |||||||||||||||||| |
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| T |
22966873 |
acgttgtcgtagcctccgacct |
22966894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 6 - 426
Target Start/End: Original strand, 44943367 - 44943783
Alignment:
| Q |
6 |
agaaacacagatcctcatcccatccaacaagaattgaattttcatcattcaattattggttttccataataaattgaattttgaataaaccacaacctct |
105 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44943367 |
agaaactcagatcctcatcccatccaacaagaattgaattttcatcattcagttattggttttctataataaattgaattttgaataaaccacaacctct |
44943466 |
T |
|
| Q |
106 |
ctattccatctaaattcattatttgattattgttttgcaaacccagttaatataattatgcaagtacgatggtttttcaatctaacaaacagtgaggtaa |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| | |||||||||||||| |||| || |
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| T |
44943467 |
ctattccatctaaattcattatttgattattgttttgcaaacccagttaatataattatgcaaataccatggtttgttaatctaacaaacagagaggaaa |
44943566 |
T |
|
| Q |
206 |
agaagg-nnnnnnnttgaatttttaattcgattattttttaactgtgatggtttttccaataaaaatagaaaatgcatatattcattnnnnnnnnnnnnn |
304 |
Q |
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| T |
44943567 |
agaaggaaaaaaaattgaatttttaattcgattattttttaactgtgatggtttttccaataaaagtagaaaatgcatatattcattaaaaacaaaaaaa |
44943666 |
T |
|
| Q |
305 |
tcaacccaaaaacgcggcgaggaggagaattcaatcaagaaacccagaaacgttggtgtaagatgtcgcagaaccacgtcttcgcctttgcataacgttt |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| | ||||||||||||||||||||||||||||||| |
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| T |
44943667 |
tcaacccaaaaacgcggcgaggaggagaattcaatcaagaaacccagaaacgtt-gcataacgt----aagaaccacgtcttcgcctttgcataacgttt |
44943761 |
T |
|
| Q |
405 |
acgctgtcgtagcctccgacct |
426 |
Q |
| |
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||| |||||||||||||||||| |
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| T |
44943762 |
acgttgtcgtagcctccgacct |
44943783 |
T |
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