View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_70 (Length: 303)
Name: NF6874A_low_70
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_70 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 2466654 - 2466930
Alignment:
| Q |
1 |
ttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggcaacta |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2466654 |
ttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggcaact- |
2466752 |
T |
|
| Q |
101 |
tgttggtgaaaagccatactaagtgcatgcttaatagaatgtttcaatttaagctatatatagaaaccataccatatgatggataaataaataaataaat |
200 |
Q |
| |
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||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2466753 |
--ttggtgaaaagccatactaagtg----------------tttcactttaagctata--tagaaaccataccatatgatggataaataaataaataaat |
2466832 |
T |
|
| Q |
201 |
ggcagggtaaacgtacgtacgtaatgagttcctgactcattatatttatagttatcatatgacatttctcgtattattggagtataataaaataatgt |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
2466833 |
ggcagggtaaacgtacgtacgtaatgagttcctgactcattatatttatagttatcatatgatatttctcatattattggagtataataaaataatgt |
2466930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 2462606 - 2462832
Alignment:
| Q |
1 |
ttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggcaacta |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2462606 |
ttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggcaacta |
2462705 |
T |
|
| Q |
101 |
tgttggtgaaaagccatactaagtgcatgcttaatagaatgtttcaatttaagctatatatagaaaccataccatatgatggataaataaataaataaat |
200 |
Q |
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||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2462706 |
tgttggtgaaaagccatactaag----------------tgtttcactttaagc--tatatagaaaccataccatatgatggataaataaataaataaat |
2462787 |
T |
|
| Q |
201 |
ggcagggtaaacgtacgtacgtaatgagttcctgactcattatat |
245 |
Q |
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|||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
2462788 |
tgcagggtaaacgtatgtacgtaatgagttcttgactcattatat |
2462832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 3063391 - 3063274
Alignment:
| Q |
1 |
ttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggcaacta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3063391 |
ttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggcaacta |
3063292 |
T |
|
| Q |
101 |
tgttggtgaaaagccata |
118 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
3063291 |
tgttggtgaaaagccata |
3063274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 2458030 - 2458154
Alignment:
| Q |
1 |
ttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggcaacta |
100 |
Q |
| |
|
|||||||||||||| || | ||| |||||||||||||||| |||||| |||||| |||| |||||||||| ||||||||||| |||||||||||||| |
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| T |
2458030 |
ttgtttggagaaacacaaagcgtattggatgtgccaaagtaagatgt---aataatggaggcacattcattatttgcaattacgatccaccaggcaacta |
2458126 |
T |
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| Q |
101 |
tgttggtgaaaagccatactaagtgcat |
128 |
Q |
| |
|
||||||| |||||||||||||||||||| |
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|
| T |
2458127 |
tgttggtcaaaagccatactaagtgcat |
2458154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 125
Target Start/End: Original strand, 2469981 - 2470100
Alignment:
| Q |
3 |
gtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggcaactatg |
102 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||| |||| ||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2469981 |
gtttggagaaacacacaacggattggatgtgccaaagtgaaatgt---aataacggaggaacattcattacttgcaattacgacccaccaggcaactata |
2470077 |
T |
|
| Q |
103 |
ttggtgaaaagccatactaagtg |
125 |
Q |
| |
|
|||| |||| |||||||||||| |
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| T |
2470078 |
ttggcgaaagaccatactaagtg |
2470100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 2474252 - 2474368
Alignment:
| Q |
3 |
gtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggcaactatg |
102 |
Q |
| |
|
|||||||||||| || ||||| |||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||| || ||||||||| |
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| T |
2474252 |
gtttggagaaacacaaaacgtattggatgtgccaaagtgaaatgtgataatg---gaggaacattcattacttgcaattacgacccccctggcaactata |
2474348 |
T |
|
| Q |
103 |
ttggtgaaaagccatactaa |
122 |
Q |
| |
|
|||| |||| ||||||||| |
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|
| T |
2474349 |
ttggcgaaagaccatactaa |
2474368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 2471017 - 2471090
Alignment:
| Q |
15 |
tcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccacc |
91 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||| |||| ||||||||||| |||||||| |||||||| |
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| T |
2471017 |
tcacaacgtgttggatgtggcaaagtgagatgtg---ataatggaggcacattcattacttgcaattatgacccacc |
2471090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 2486524 - 2486576
Alignment:
| Q |
1 |
ttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataat |
53 |
Q |
| |
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|||||||| ||| |||| |||||||||||||| |||||||| |||||||||| |
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| T |
2486524 |
ttgtttgggaaaaatcactacgtgttggatgtggcaaagtgaaatgtgataat |
2486576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 18015929 - 18016046
Alignment:
| Q |
1 |
ttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggcaacta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18015929 |
ttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggcaacta |
18016028 |
T |
|
| Q |
101 |
tgttggtgaaaagccata |
118 |
Q |
| |
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|||||||||||||||||| |
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| T |
18016029 |
tgttggtgaaaagccata |
18016046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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