View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6874A_low_72 (Length: 301)

Name: NF6874A_low_72
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6874A_low_72
NF6874A_low_72
[»] chr4 (14 HSPs)
chr4 (18-173)||(38147357-38147519)
chr4 (24-146)||(12639721-12639843)
chr4 (24-138)||(28103806-28103920)
chr4 (50-139)||(917683-917772)
chr4 (30-146)||(43012754-43012870)
chr4 (30-117)||(23643431-23643518)
chr4 (52-117)||(12639208-12639273)
chr4 (30-146)||(54714873-54714989)
chr4 (52-114)||(28104360-28104421)
chr4 (52-114)||(919115-919176)
chr4 (28-59)||(918651-918682)
chr4 (100-146)||(12629834-12629880)
chr4 (52-146)||(43013130-43013224)
chr4 (26-66)||(23037998-23038038)
[»] chr2 (8 HSPs)
chr2 (24-145)||(4329599-4329720)
chr2 (24-146)||(39865298-39865420)
chr2 (24-146)||(29770766-29770888)
chr2 (30-158)||(30674429-30674557)
chr2 (30-145)||(9074598-9074713)
chr2 (52-143)||(4330136-4330226)
chr2 (30-134)||(9914204-9914308)
chr2 (52-114)||(29771299-29771360)
[»] chr3 (9 HSPs)
chr3 (174-301)||(45395432-45395560)
chr3 (24-146)||(23566889-23567011)
chr3 (24-144)||(39737724-39737844)
chr3 (30-143)||(785770-785883)
chr3 (30-117)||(30385749-30385836)
chr3 (52-114)||(39737232-39737293)
chr3 (30-84)||(53153855-53153909)
chr3 (224-290)||(50470355-50470421)
chr3 (52-144)||(23566432-23566522)
[»] scaffold0064 (1 HSPs)
scaffold0064 (173-301)||(19923-20052)
[»] chr7 (11 HSPs)
chr7 (24-146)||(31166954-31167076)
chr7 (28-134)||(21971546-21971651)
chr7 (42-125)||(27596002-27596084)
chr7 (30-149)||(28750927-28751045)
chr7 (30-145)||(38916392-38916507)
chr7 (30-134)||(27230474-27230578)
chr7 (32-147)||(15577468-15577578)
chr7 (52-145)||(21972092-21972184)
chr7 (30-138)||(32741787-32741895)
chr7 (52-145)||(38916045-38916138)
chr7 (26-85)||(21948149-21948208)
[»] chr6 (6 HSPs)
chr6 (174-301)||(17922863-17922991)
chr6 (30-144)||(8700890-8701004)
chr6 (30-117)||(12307301-12307388)
chr6 (30-117)||(7727381-7727468)
chr6 (30-139)||(604984-605096)
chr6 (52-146)||(12306970-12307064)
[»] chr8 (7 HSPs)
chr8 (24-142)||(26759207-26759325)
chr8 (24-137)||(146644-146757)
chr8 (30-149)||(308301-308420)
chr8 (30-138)||(186682-186790)
chr8 (55-146)||(187049-187140)
chr8 (52-114)||(147190-147251)
chr8 (30-84)||(25277141-25277195)
[»] chr5 (5 HSPs)
chr5 (24-146)||(39121834-39121956)
chr5 (174-290)||(3623478-3623594)
chr5 (30-138)||(14393983-14394091)
chr5 (31-146)||(20983543-20983658)
chr5 (30-138)||(25672272-25672380)
[»] chr1 (2 HSPs)
chr1 (30-138)||(40888792-40888900)
chr1 (78-146)||(23269946-23270014)


Alignment Details
Target: chr4 (Bit Score: 121; Significance: 5e-62; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 18 - 173
Target Start/End: Complemental strand, 38147519 - 38147357
Alignment:
Q  18 gacatcaaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgggatgaattaagtgagatcaatttatttattg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  38147519 gacatcaaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatccatttatttattg 38147420  T
Q  118 actatttactgttccttatccagtgccc-------ctggttaacattgcccaaattattaaat 173  Q
    ||||||||||||||||||||||||||||       | ||||| ||||||||||||||||||||    
T  38147419 actatttactgttccttatccagtgcccgaaagcaccggttagcattgcccaaattattaaat 38147357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 24 - 146
Target Start/End: Original strand, 12639721 - 12639843
Alignment:
Q  24 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgggatgaattaagtgagatcaatttatttattgactatt 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||| |||||||||||| |||||    
T  12639721 aaagagtattgaatatagcttttattatttttaattagttgacatattttacactttaattgaggtgaattaagtgagatccatttatttattgcctatt 12639820  T
Q  124 tactgttccttatccagtgcccc 146  Q
    || ||||||||||||||| ||||    
T  12639821 tattgttccttatccagtacccc 12639843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 24 - 138
Target Start/End: Complemental strand, 28103920 - 28103806
Alignment:
Q  24 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgggatgaattaagtgagatcaatttatttattgactatt 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||| ||| ||||    
T  28103920 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactctaattgagatgaattaagtgagatccatttatttaatgattatt 28103821  T
Q  124 tactgttccttatcc 138  Q
    || ||||||||||||    
T  28103820 tattgttccttatcc 28103806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 50 - 139
Target Start/End: Complemental strand, 917772 - 917683
Alignment:
Q  50 atttttaattagttgacatatattacactttaattgggatgaattaagtgagatcaatttatttattgactatttactgttccttatcca 139  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| | ||||  |||||||||||||||||||| ||||| |||||||    
T  917772 atttttaattagttgacatatattacactttaattgagatgaattaacttagattcatttatttattgactatttattgttctttatcca 917683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 30 - 146
Target Start/End: Complemental strand, 43012870 - 43012754
Alignment:
Q  30 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgggatgaattaagtgagatcaatttatttattgactatttactgt 129  Q
    ||||||||||| | ||||||| |||||||||||||| |||| |||||||||||||  | | ||  || ||||||| |||||||||||| ||||||| |||    
T  43012870 tattgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaaccaaatgagatccatttatttattgtctatttattgt 43012771  T
Q  130 tccttatccagtgcccc 146  Q
    |||||||||||||||||    
T  43012770 tccttatccagtgcccc 43012754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 30 - 117
Target Start/End: Complemental strand, 23643518 - 23643431
Alignment:
Q  30 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgggatgaattaagtgagatcaatttatttattg 117  Q
    ||||||||||||| ||||||| |||||||||||||| |||| |||||||||||||  ||| ||| |||||||||||||||||||||||    
T  23643518 tattgaatatagcatttattaattttaattagttgaaatattttacactttaattaagataaatgaagtgagatcaatttatttattg 23643431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 12639273 - 12639208
Alignment:
Q  52 ttttaattagttgacatatattacactttaattgggatgaattaagtgagatcaatttatttattg 117  Q
    ||||||||||||||||||| |||||| ||||||| | | |||||||||||||| ||||||||||||    
T  12639273 ttttaattagttgacatattttacacattaattgaggtaaattaagtgagatccatttatttattg 12639208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 146
Target Start/End: Original strand, 54714873 - 54714989
Alignment:
Q  30 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgggatgaattaagtgagatcaatttatttattgactatttactgt 129  Q
    ||||||||||| | ||||||| ||||||||| || | |||| |||||||||||||  ||| ||| |||||| ||| |||||||||||| ||||||  | |    
T  54714873 tattgaatataacatttattaattttaattatttaaaatattttacactttaattaagataaatcaagtgaaatccatttatttattgcctattttttat 54714972  T
Q  130 tccttatccagtgcccc 146  Q
    || ||||||| ||||||    
T  54714973 tctttatccaatgcccc 54714989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 114
Target Start/End: Original strand, 28104360 - 28104421
Alignment:
Q  52 ttttaattagttgacatatattacactttaattgggatgaattaagtgagatcaatttattta 114  Q
    |||||||||||||| |||| ||||| |||||||| |||||||||||||||||| |||||||||    
T  28104360 ttttaattagttgatatattttaca-tttaattgagatgaattaagtgagatccatttattta 28104421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 114
Target Start/End: Original strand, 919115 - 919176
Alignment:
Q  52 ttttaattagttgacatatattacactttaattgggatgaattaagtgagatcaatttattta 114  Q
    |||||||||||||| |||| ||||| |||||||| |||||||||||||||||  |||||||||    
T  919115 ttttaattagttgatatattttaca-tttaattgagatgaattaagtgagattcatttattta 919176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 59
Target Start/End: Complemental strand, 918682 - 918651
Alignment:
Q  28 agtattgaatatagcttttattatttttaatt 59  Q
    ||||||||||||||||||||||||||||||||    
T  918682 agtattgaatatagcttttattatttttaatt 918651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 146
Target Start/End: Complemental strand, 12629880 - 12629834
Alignment:
Q  100 agatcaatttatttattgactatttactgttccttatccagtgcccc 146  Q
    ||||| ||| |||||||| ||||||| ||||||||||||||||||||    
T  12629880 agatctattcatttattgtctatttaatgttccttatccagtgcccc 12629834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 146
Target Start/End: Original strand, 43013130 - 43013224
Alignment:
Q  52 ttttaattagttgacatatattacactttaattgggatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcccc 146  Q
    ||||||||||||||| |||||  ||||||||||  | | ||  || ||| ||| |||||||||||| ||||||| | || |||||||||||||||    
T  43013130 ttttaattagttgacttatatctcactttaatttaggtaaaccaattgaaatccatttatttattgcctatttattatttcttatccagtgcccc 43013224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 23037998 - 23038038
Alignment:
Q  26 agagtattgaatatagcttttattatttttaattagttgac 66  Q
    ||||||||||||| | ||||||||| |||||||||||||||    
T  23037998 agagtattgaatacaacttttattaattttaattagttgac 23038038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 24 - 145
Target Start/End: Complemental strand, 4329720 - 4329599
Alignment:
Q  24 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgggatgaattaagtgagatcaatttatttattgactatt 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||    
T  4329720 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatctatttatttattaactatt 4329621  T
Q  124 tactgttccttatccagtgccc 145  Q
    ||||||||||||||||||||||    
T  4329620 tactgttccttatccagtgccc 4329599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 24 - 146
Target Start/End: Original strand, 39865298 - 39865420
Alignment:
Q  24 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgggatgaattaagtgagatcaatttatttattgactatt 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||  ||||||||| | ||||||    
T  39865298 aaagagtattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtgagattcatttatttaattactatt 39865397  T
Q  124 tactgttccttatccagtgcccc 146  Q
    || ||||||||||||||||||||    
T  39865398 tattgttccttatccagtgcccc 39865420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 24 - 146
Target Start/End: Complemental strand, 29770888 - 29770766
Alignment:
Q  24 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgggatgaattaagtgagatcaatttatttattgactatt 123  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||  ||||||||| | ||||||    
T  29770888 aaagagtattgattatagcttttattatttttaattagttgacatatattatactttaactgagatgaattaagtgagattcatttatttaattactatt 29770789  T
Q  124 tactgttccttatccagtgcccc 146  Q
    || ||||||||||||||||||||    
T  29770788 tattgttccttatccagtgcccc 29770766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 158
Target Start/End: Original strand, 30674429 - 30674557
Alignment:
Q  30 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgggatgaattaagtgagatcaatttatttattgactatttactgt 129  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||||| |||||||  ||| ||| |||||||||| ||||||||||||  |||| | |||    
T  30674429 tattgaatataacatttattaattttaattagttgaaatattttacattttaattaagataaatcaagtgagatctatttatttattgcttattaattgt 30674528  T
Q  130 tccttatccagtgcccctggttaacattg 158  Q
    || |||||| ||||||| ||||| |||||    
T  30674529 tctttatccggtgcccccggttagcattg 30674557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 30 - 145
Target Start/End: Complemental strand, 9074713 - 9074598
Alignment:
Q  30 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgggatgaattaagtgagatcaatttatttattgactatttactgt 129  Q
    ||||||||||| | ||||||| |||||||||||||| |||| |||||||||||||  | | ||  |||||||||| |||||||||||| ||||||| |||    
T  9074713 tattgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaaccaagtgagatccatttatttattgtctatttattgt 9074614  T
Q  130 tccttatccagtgccc 145  Q
    || |||||| ||||||    
T  9074613 tctttatccggtgccc 9074598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 143
Target Start/End: Original strand, 4330136 - 4330226
Alignment:
Q  52 ttttaattagttgacatatattacactttaattgggatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgc 143  Q
    |||||||||||| |||||| ||||| |||||||| |||||||||||||||||| ||||||||| ||  |||| | |||||||||||||||||    
T  4330136 ttttaattagttaacatattttaca-tttaattgagatgaattaagtgagatccatttatttaatgcatattaattgttccttatccagtgc 4330226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 134
Target Start/End: Complemental strand, 9914308 - 9914204
Alignment:
Q  30 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgggatgaattaagtgagatcaatttatttattgactatttactgt 129  Q
    ||||||||||||| ||||||| ||||| |||||||| |||| |||||||||||||    | ||| |||||||||  |||||||||||  ||||||| |||    
T  9914308 tattgaatatagcatttattaattttagttagttgaaatattttacactttaattaaagtaaatcaagtgagattcatttatttattacctatttattgt 9914209  T
Q  130 tcctt 134  Q
    |||||    
T  9914208 tcctt 9914204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 114
Target Start/End: Original strand, 29771299 - 29771360
Alignment:
Q  52 ttttaattagttgacatatattacactttaattgggatgaattaagtgagatcaatttattta 114  Q
    ||||||||||||||||||| ||||| | |||||| |||||||||||||||||  |||||||||    
T  29771299 ttttaattagttgacatattttaca-tataattgagatgaattaagtgagattcatttattta 29771360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 174 - 301
Target Start/End: Complemental strand, 45395560 - 45395432
Alignment:
Q  174 ggaaaatgctttattacacgacataaaccatgcacgagaaacccacgatgctattacaatccttggatgtttttctttccattaattaattatattctct 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||| ||||||||||||||    
T  45395560 ggaaaatgctttattacacgacataaaccatgcacgagaaacccacgatgttattaccatccttggatatttttctttccattaactaattatattctct 45395461  T
Q  274 caccccatgttttcc-ttccaccgcttga 301  Q
    || |||||||||||| |||||||||||||    
T  45395460 catcccatgttttcctttccaccgcttga 45395432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 24 - 146
Target Start/End: Original strand, 23566889 - 23567011
Alignment:
Q  24 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgggatgaattaagtgagatcaatttatttattgactatt 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||  ||||||||| | ||||||    
T  23566889 aaagagtattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtgatattcatttatttaattactatt 23566988  T
Q  124 tactgttccttatccagtgcccc 146  Q
    || ||||||||||||||||||||    
T  23566989 tattgttccttatccagtgcccc 23567011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 24 - 144
Target Start/End: Original strand, 39737724 - 39737844
Alignment:
Q  24 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgggatgaattaagtgagatcaatttatttattgactatt 123  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||| | |||||||| |||||||||| | ||||| ||||||||| | ||||||    
T  39737724 aaagaatattgaatatagcttttattatttttaattagttaacatatattatattttaattgagatgaattaaataagatctatttatttaattactatt 39737823  T
Q  124 tactgttccttatccagtgcc 144  Q
    || ||||||||||||||||||    
T  39737824 tattgttccttatccagtgcc 39737844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 30 - 143
Target Start/End: Original strand, 785770 - 785883
Alignment:
Q  30 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgggatgaattaagtgagatcaatttatttattgactatttactgt 129  Q
    |||||||||||||  |||||| ||||||||| |||  |||| ||||||||| |||  | | ||| |||||||||| |||||||||||| ||||||| |||    
T  785770 tattgaatatagcaattattaattttaattaattgcaatattttacactttgattaaggtaaatcaagtgagatccatttatttattgcctatttaatgt 785869  T
Q  130 tccttatccagtgc 143  Q
    ||||||| ||||||    
T  785870 tccttattcagtgc 785883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 117
Target Start/End: Original strand, 30385749 - 30385836
Alignment:
Q  30 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgggatgaattaagtgagatcaatttatttattg 117  Q
    ||||||||||| | ||||||| |||||||||||||| |||| |||||||||||||  | | ||| || ||||||| ||||||||||||    
T  30385749 tattgaatatatcatttattaattttaattagttgaaatattttacactttaattaaggtaaatcaaatgagatccatttatttattg 30385836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 114
Target Start/End: Complemental strand, 39737293 - 39737232
Alignment:
Q  52 ttttaattagttgacatatattacactttaattgggatgaattaagtgagatcaatttattta 114  Q
    ||||||||||||||||||| ||||| |||||||| |||| ||||||||||||  |||||||||    
T  39737293 ttttaattagttgacatattttaca-tttaattgagatggattaagtgagattcatttattta 39737232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 53153855 - 53153909
Alignment:
Q  30 tattgaatatagcttttattatttttaattagttgacatatattacactttaatt 84  Q
    ||||||||||| | ||||||| |||||||||||||| |||| |||||||||||||    
T  53153855 tattgaatataacatttattaattttaattagttgaaatattttacactttaatt 53153909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 290
Target Start/End: Complemental strand, 50470421 - 50470355
Alignment:
Q  224 ctattacaatccttggatgtttttctttccattaattaattatattctctcaccccatgttttcctt 290  Q
    ||||||| ||| |||||||||| | ||||| |||| |||||  |||||||| |||||||||||||||    
T  50470421 ctattaccatctttggatgtttatatttccgttaactaattgaattctctctccccatgttttcctt 50470355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 144
Target Start/End: Complemental strand, 23566522 - 23566432
Alignment:
Q  52 ttttaattagttgacatatattacactttaattgggatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcc 144  Q
    ||||||||||||||||||  ||||| |||| ||| |||||||||||| ||||  ||||||||| ||  |||| | |||| |||||||||||||    
T  23566522 ttttaattagttgacatagtttaca-tttatttgagatgaattaagtaagatttatttatttaatgcatattaattgtt-cttatccagtgcc 23566432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 173 - 301
Target Start/End: Complemental strand, 20052 - 19923
Alignment:
Q  173 tggaaaatgctttattacacgacataaaccatgcacgagaaacccacgatgctattacaatccttggatgtttttctttccattaattaattatattctc 272  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||  ||||||||||||||||||||||||||||| |||||||||||    
T  20052 tggaaaatgctttattacacgacataaaccatgcacgagaaagccacgatgttattatcatccttggatgtttttctttccattaattgattatattctc 19953  T
Q  273 tcaccccatgttttcc-ttccaccgcttga 301  Q
    ||| |||||||||||| |||||||||||||    
T  19952 tcatcccatgttttcctttccaccgcttga 19923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 24 - 146
Target Start/End: Original strand, 31166954 - 31167076
Alignment:
Q  24 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgggatgaattaagtgagatcaatttatttattgactatt 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||  ||||||||| | ||||||    
T  31166954 aaagagtattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtgagattcatttatttaattactatt 31167053  T
Q  124 tactgttccttatccagtgcccc 146  Q
    || ||||||||||||||||||||    
T  31167054 tattgttccttatccagtgcccc 31167076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 28 - 134
Target Start/End: Complemental strand, 21971651 - 21971546
Alignment:
Q  28 agtattgaatatagcttttattatttttaattagttgacatatattacactttaattgggatgaattaagtgagatcaatttatttattgactatttact 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||| ||||||||| | | |||||| |    
T  21971651 agtattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgagttaagtgagatc-atttatttaattattatttatt 21971553  T
Q  128 gttcctt 134  Q
    |||||||    
T  21971552 gttcctt 21971546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 42 - 125
Target Start/End: Complemental strand, 27596084 - 27596002
Alignment:
Q  42 cttttattatttttaattagttgacatatattacactttaattgggatgaattaagtgagatcaatttatttattgactattta 125  Q
    ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||    
T  27596084 cttttattatttttaattagttgac-tatattacactttaattgagatgaattaagtgagatccatttatttattggctattta 27596002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 30 - 149
Target Start/End: Original strand, 28750927 - 28751045
Alignment:
Q  30 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgggatgaattaagtgagatcaatttatttattgactatttactgt 129  Q
    ||||||||||| | ||||||| |||||||||||||| |||| |||||||||||||  | | || ||||||||||| |||||||||||| ||||||| |||    
T  28750927 tattgaatata-catttattaattttaattagttgaaatattttacactttaattaaggtaaactaagtgagatccatttatttattgcctatttattgt 28751025  T
Q  130 tccttatccagtgcccctgg 149  Q
    ||||||||||||||||||||    
T  28751026 tccttatccagtgcccctgg 28751045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 30 - 145
Target Start/End: Original strand, 38916392 - 38916507
Alignment:
Q  30 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgggatgaattaagtgagatcaatttatttattgactatttactgt 129  Q
    |||| |||||| | ||||||| |||||||||||||| |||| |||||||||||||  | | ||| |||||||||| |||||||||||| ||||||| |||    
T  38916392 tattaaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaatcaagtgagatccatttatttattgtctatttattgt 38916491  T
Q  130 tccttatccagtgccc 145  Q
    || |||||||||||||    
T  38916492 tctttatccagtgccc 38916507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 134
Target Start/End: Complemental strand, 27230578 - 27230474
Alignment:
Q  30 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgggatgaattaagtgagatcaatttatttattgactatttactgt 129  Q
    ||||||||||||| ||||||| |||||||||||||| |||| |||||||||||||  | | ||| || ||||||  |||||||||||| ||||| | |||    
T  27230578 tattgaatatagcatttattaattttaattagttgaaatattttacactttaattaaggtaaatcaaatgagattcatttatttattgtctattaattgt 27230479  T
Q  130 tcctt 134  Q
    |||||    
T  27230478 tcctt 27230474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 32 - 147
Target Start/End: Complemental strand, 15577578 - 15577468
Alignment:
Q  32 ttgaatatagcttttattatttttaattagttgacatatattacactttaattgggatgaattaagtgagatcaatttatttattgactatttactgttc 131  Q
    ||||||||| | ||||||| |||||||||||||| |||| |||||||||||||  | | || ||||||||||| ||||     ||| ||||||| |||||    
T  15577578 ttgaatatatcatttattaattttaattagttgaaatattttacactttaattaaggtaaactaagtgagatccattt-----ttgtctatttattgttc 15577484  T
Q  132 cttatccagtgcccct 147  Q
    ||||||||||||||||    
T  15577483 cttatccagtgcccct 15577468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 52 - 145
Target Start/End: Original strand, 21972092 - 21972184
Alignment:
Q  52 ttttaattagttgacatatattacactttaattgggatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgccc 145  Q
    ||||||||||||||||||| ||||| |||||||  |||||||||||||||||  ||||||||| ||  | || | |||||||||||||||||||    
T  21972092 ttttaattagttgacatattttaca-tttaattaagatgaattaagtgagattcatttatttaatgcattttaattgttccttatccagtgccc 21972184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 138
Target Start/End: Original strand, 32741787 - 32741895
Alignment:
Q  30 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgggatgaattaagtgagatcaatttatttattgactatttactgt 129  Q
    ||||||||||||| ||||||| |||||| ||||||| |||| ||| |||||||||  | | ||  |||||||||| ||||||||||||  |||||| |||    
T  32741787 tattgaatatagcatttattaattttaaatagttgaaatattttatactttaattaaggtaaaccaagtgagatccatttatttattgcttatttattgt 32741886  T
Q  130 tccttatcc 138  Q
    || ||||||    
T  32741887 tcattatcc 32741895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 145
Target Start/End: Complemental strand, 38916138 - 38916045
Alignment:
Q  52 ttttaattagttgacatatattacactttaattgggatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgccc 145  Q
    ||||||||||||||| |||||  ||||||||||  ||| ||  || ||||||| |||||||||||| ||||||| | || ||||||||||||||    
T  38916138 ttttaattagttgacttatatctcactttaatttagataaaccaattgagatctatttatttattgcctatttattatttcttatccagtgccc 38916045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 21948208 - 21948149
Alignment:
Q  26 agagtattgaatatagcttttattatttttaattagttgacatatattacactttaattg 85  Q
    ||||||||||||| || |||||||| ||||||||||||||| ||| ||||| ||| ||||    
T  21948208 agagtattgaatagagtttttattaattttaattagttgacttattttacattttgattg 21948149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 4e-44; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 174 - 301
Target Start/End: Complemental strand, 17922991 - 17922863
Alignment:
Q  174 ggaaaatgctttattacacgacataaaccatgcacgagaaacccacgatgctattacaatccttggatgtttttctttccattaattaattatattctct 273  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||  ||||||||||||||    
T  17922991 ggaaaatgctttattacacgacataaaccatgcacgagaaacccacgatgctattaccacccttggatgtttttctttccattagctaattatattctct 17922892  T
Q  274 caccccatgtttt--ccttccaccgcttga 301  Q
    || ||||||||||  | |||||||||||||    
T  17922891 ca-cccatgtttttcctttccaccgcttga 17922863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 8701004 - 8700890
Alignment:
Q  30 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgggatgaattaagtgagatcaatttatttattgactatttactgt 129  Q
    ||||||||||| | ||||||| |||||||||||| | |||| |||||||||||||  | | ||| |||||||||| || ||||||||| ||||||| |||    
T  8701004 tattgaatataacatttattaattttaattagttaaaatattttacactttaattaaggtaaatcaagtgagatccatctatttattgcctatttattgt 8700905  T
Q  130 tccttatccagtgcc 144  Q
    ||||||||| |||||    
T  8700904 tccttatccggtgcc 8700890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 117
Target Start/End: Original strand, 12307301 - 12307388
Alignment:
Q  30 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgggatgaattaagtgagatcaatttatttattg 117  Q
    ||||||||||| | ||||||| |||||||||||||| |||| |||||||||||||  ||| ||| |||||||||| ||||||||||||    
T  12307301 tattgaatataacatttattaattttaattagttgaaatattttacactttaattaagataaatcaagtgagatctatttatttattg 12307388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 117
Target Start/End: Original strand, 7727381 - 7727468
Alignment:
Q  30 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgggatgaattaagtgagatcaatttatttattg 117  Q
    ||||||||||| | ||||||| |||||||||||||| |||| |||||||||||||  | | ||  |||||||||||||||||||||||    
T  7727381 tattgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaaccaagtgagatcaatttatttattg 7727468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 139
Target Start/End: Complemental strand, 605096 - 604984
Alignment:
Q  30 tattgaatatagcttttattatttttaatta---gttgacatatattacactttaattgggatgaattaagtgagatcaatttatttattgactatttac 126  Q
    ||||||||||| | ||||||| |||||||||   ||||| |||| ||| |||||||||  | | ||| |||||||||| |||||||||||| |||||||     
T  605096 tattgaatataacatttattaattttaattattagttgaaatattttatactttaattaaggtaaatcaagtgagatccatttatttattgcctatttat 604997  T
Q  127 tgttccttatcca 139  Q
    |||||||||||||    
T  604996 tgttccttatcca 604984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 146
Target Start/End: Complemental strand, 12307064 - 12306970
Alignment:
Q  52 ttttaattagttgacatatattacactttaattgggatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcccc 146  Q
    ||||||||||||||| |||||  ||||||||||  | | ||| || | ||||  |||||||||||| ||||||| | || |||||||||||||||    
T  12307064 ttttaattagttgacttatatctcactttaatttaggtaaatcaattaagattcatttatttattgtctatttattatttcttatccagtgcccc 12306970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 24 - 142
Target Start/End: Complemental strand, 26759325 - 26759207
Alignment:
Q  24 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgggatgaattaagtgagatcaatttatttattgactatt 123  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||| ||||||||| | ||||||    
T  26759325 aaagagtatttaatatagcttttattatttttaattagttggcatatattatactttaattgagatgaattaagtgagatccatttatttaattactatt 26759226  T
Q  124 tactgttccttatccagtg 142  Q
    || ||||||||||||||||    
T  26759225 tattgttccttatccagtg 26759207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 24 - 137
Target Start/End: Complemental strand, 146757 - 146644
Alignment:
Q  24 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgggatgaattaagtgagatcaatttatttattgactatt 123  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||| ||| |||||||||| ||||||||| || |||||    
T  146757 aaagagtattgaatatagtttttattaattttaattagttgacatatattacactttaattgagattaataaagtgagatccatttatttaatggctatt 146658  T
Q  124 tactgttccttatc 137  Q
    || ||||| |||||    
T  146657 tattgttcattatc 146644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 149
Target Start/End: Complemental strand, 308420 - 308301
Alignment:
Q  30 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgggatgaattaagtgagatcaatttatttattgactatttactgt 129  Q
    ||||||||||| | ||||||| |||||||||||||| |||| |||||||||||||  | | || ||||||||||| |||||||||||| ||||||| |||    
T  308420 tattgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaactaagtgagatccatttatttattgcctatttattgt 308321  T
Q  130 tccttatccagtgcccctgg 149  Q
    || |||||| ||||||||||    
T  308320 tcattatccggtgcccctgg 308301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 138
Target Start/End: Complemental strand, 186790 - 186682
Alignment:
Q  30 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgggatgaattaagtgagatcaatttatttattgactatttactgt 129  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||||| |||||||  ||| ||| |||||||||| |||||||||||  ||||||| |||    
T  186790 tattgaatataacatttattaattttaattagttgaaatattttacaatttaattaagataaatcaagtgagatccatttatttattagctatttattgt 186691  T
Q  130 tccttatcc 138  Q
    |||||||||    
T  186690 tccttatcc 186682  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 55 - 146
Target Start/End: Original strand, 187049 - 187140
Alignment:
Q  55 taattagttgacatatattacactttaattgggatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcccc 146  Q
    |||||||||||| |||||  ||||||||||  | | || ||| ||||||  |||||||||||| ||||||| | || |||||||||||||||    
T  187049 taattagttgacttatatctcactttaatttaggtaaactaattgagattcatttatttattgcctatttattatttcttatccagtgcccc 187140  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 114
Target Start/End: Original strand, 147190 - 147251
Alignment:
Q  52 ttttaattagttgacatatattacactttaattgggatgaattaagtgagatcaatttattta 114  Q
    ||||||||||||||||||| ||| | |||||||  |||||||||||||||||| || ||||||    
T  147190 ttttaattagttgacatattttata-tttaattaagatgaattaagtgagatccatatattta 147251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 25277141 - 25277195
Alignment:
Q  30 tattgaatatagcttttattatttttaattagttgacatatattacactttaatt 84  Q
    ||||||||||||| ||||||| |||||||||||| | |||| | |||||||||||    
T  25277141 tattgaatatagcatttattaattttaattagttaaaatatttcacactttaatt 25277195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 24 - 146
Target Start/End: Original strand, 39121834 - 39121956
Alignment:
Q  24 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgggatgaattaagtgagatcaatttatttattgactatt 123  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||  ||||||||| | ||||||    
T  39121834 aaagagtattgaatataacttttattatttttaattagttgacatatattatactttaattgagataaattaagtgagattcatttatttaattactatt 39121933  T
Q  124 tactgttccttatccagtgcccc 146  Q
    || ||||||||||||||||||||    
T  39121934 tattgttccttatccagtgcccc 39121956  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 174 - 290
Target Start/End: Complemental strand, 3623594 - 3623478
Alignment:
Q  174 ggaaaatgctttattacacgacataaaccatgcacgagaaacccacgatgctattacaatccttggatgtttttctttccattaattaattatattctct 273  Q
    |||||||||||||||  |||| | |||||||||||||||| ||||| | |||||||| | |||||||||||||| |||||||||| ||||||||||||||    
T  3623594 ggaaaatgctttatttgacgatagaaaccatgcacgagaagcccacaaagctattaccacccttggatgtttttatttccattaactaattatattctct 3623495  T
Q  274 caccccatgttttcctt 290  Q
    |||||||| ||||||||    
T  3623494 caccccatattttcctt 3623478  T

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Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 138
Target Start/End: Complemental strand, 14394091 - 14393983
Alignment:
Q  30 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgggatgaattaagtgagatcaatttatttattgactatttactgt 129  Q
    ||||||||||||| |||||||  ||||||||||||| |||| ||||| |||||||  ||| ||| |||||||||| ||||||||||||  |||||| |||    
T  14394091 tattgaatatagcatttattaaatttaattagttgaaatattttacattttaattaagataaatcaagtgagatccatttatttattgcttatttattgt 14393992  T
Q  130 tccttatcc 138  Q
    |||||||||    
T  14393991 tccttatcc 14393983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 146
Target Start/End: Complemental strand, 20983658 - 20983543
Alignment:
Q  31 attgaatatagcttttattatttttaattagttgacatatattacactttaattgggatgaattaagtgagatcaatttatttattgactatttactgtt 130  Q
    |||||||||| | ||||||| |||||||||||||| |||| |||||||||||||  | | ||  || ||||||| |||||||||||| ||||||| | ||    
T  20983658 attgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaaccaaatgagatccatttatttattgtctatttattttt 20983559  T
Q  131 ccttatccagtgcccc 146  Q
     |||||||||||||||    
T  20983558 tcttatccagtgcccc 20983543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 138
Target Start/End: Complemental strand, 25672380 - 25672272
Alignment:
Q  30 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgggatgaattaagtgagatcaatttatttattgactatttactgt 129  Q
    |||| |||||||| ||||||| |||||||||||||| |||| |||||||||||||   || ||  |||||||||| ||||||||||||  |||| | |||    
T  25672380 tattaaatatagcatttattaattttaattagttgaaatattttacactttaattaatataaaccaagtgagatccatttatttattgcatattcattgt 25672281  T
Q  130 tccttatcc 138  Q
    |||||||||    
T  25672280 tccttatcc 25672272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 30 - 138
Target Start/End: Complemental strand, 40888900 - 40888792
Alignment:
Q  30 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgggatgaattaagtgagatcaatttatttattgactatttactgt 129  Q
    ||||||||||||| ||||||| |||||||||||||| |||| |||||||||||||  ||| ||| |||| ||||| |||||| ||||| ||||| | |||    
T  40888900 tattgaatatagcatttattaattttaattagttgaaatattttacactttaattaagataaatcaagttagatccatttatgtattgcctattaattgt 40888801  T
Q  130 tccttatcc 138  Q
    | |||||||    
T  40888800 ttcttatcc 40888792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 23270014 - 23269946
Alignment:
Q  78 tttaattgggatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcccc 146  Q
    |||||||| | | ||| |||| ||||| ||| |||||||| ||||||| ||||||||||||||||||||    
T  23270014 tttaattgaggtaaatcaagtaagatctattcatttattgtctatttaatgttccttatccagtgcccc 23269946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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