View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_8 (Length: 441)
Name: NF6874A_low_8
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 408; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 16 - 435
Target Start/End: Complemental strand, 17432489 - 17432070
Alignment:
| Q |
16 |
gccaaagttacagtcaagcgaagaacagaatgattagttgaatcatcgtaagatacagtttcaaacacaacaaatcctcttgcatatcgaaaccttcctg |
115 |
Q |
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| T |
17432489 |
gccaaagttacagtcaaacgaagaacagaatgattagttgaatcatcataagatacagtttcaaacacaacaaatcctcttgcatatcgaaaccttcctg |
17432390 |
T |
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| Q |
116 |
ttccggaaacaacagaaagctctcttgaattttcgcgttgtcgactagcaccttgaatctccaaagtgctaccactatattgcccattgttgaccacaag |
215 |
Q |
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| T |
17432389 |
ttccggaaacaacagaaagctctcttgaattttcgcgttgtcgactagcaccttgaatctccaaagtgctaccactatattgcccattgttgaacacaag |
17432290 |
T |
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| Q |
216 |
tgacaaaactatgctcacatttgaaccatcaagagatgttactgtaatcataccttgagcccttccgatttgagttgaacctggattagggtttaacata |
315 |
Q |
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| T |
17432289 |
tgacaaaactatgctcacatttgaaccatcaagagatgttactgtaatcataccttgagcccttccgatttgagttgaacctggattagggtttaacata |
17432190 |
T |
|
| Q |
316 |
atagggtcatcgactacaaatattgttccaaatgagttgtaggaccaaacctttccattgatgccgataactggttgaacggttgcgccaactccttttc |
415 |
Q |
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| T |
17432189 |
atagggtcatcgactacaaatattgttccaaatgagttgtaggaccaaacctttccattgatgccgataactggttgaacggttgcgccaactccttttc |
17432090 |
T |
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| Q |
416 |
cgacatcttgtaggaagaac |
435 |
Q |
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| T |
17432089 |
cgacatcttgtaggaagaac |
17432070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 59 - 435
Target Start/End: Complemental strand, 17436319 - 17435943
Alignment:
| Q |
59 |
catcgtaagatacagtttcaaacacaacaaatcctcttgcatatcgaaaccttcctgttccggaaacaacagaaagctctcttgaattttcgcgttgtcg |
158 |
Q |
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|||| ||||| | |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || ||||| || |
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| T |
17436319 |
catcataagacatagtttcaaacacaacaaaccctcttgcatatcgaaaccttcctgttccagaaacaacagagagctctcttgaattctcacgttgacg |
17436220 |
T |
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| Q |
159 |
actagcaccttgaatctccaaagtgctaccactatattgcccattgttgaccacaagtgacaaaactatgctcacatttgaaccatcaagagatgttact |
258 |
Q |
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|||| |||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| |||||| |||||||| ||| |
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| T |
17436219 |
actattaccttgtatctccaaagtgctaccactatattccccattgttgaacacaagtgacaaaactatgttcacatttgcaccatctagagatgtcact |
17436120 |
T |
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| Q |
259 |
gtaatcataccttgagcccttccgatttgagttgaacctggattagggtttaacataatagggtcatcgactacaaatattgttccaaatgagttgtagg |
358 |
Q |
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||||| | |||||| |||||||| |||||||||||| |||| ||||| ||||||| | |||||||| || |||||||||||||| ||||||| ||| | |
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| T |
17436119 |
gtaattacaccttgtgcccttccaatttgagttgaaaatggactagggcttaacatgacggggtcatcaacgacaaatattgttccgaatgagtggtaag |
17436020 |
T |
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| Q |
359 |
accaaacctttccattgatgccgataactggttgaacggttgcgccaactccttttccgacatcttgtaggaagaac |
435 |
Q |
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|||||||| |||| |||||||||||||| || |||||||||| | |||| |||| |||||||||||| ||||| |
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| T |
17436019 |
accaaacccttccgttgatgccgataaccggcataacggttgcgttgaatcctcttcccacatcttgtaggtagaac |
17435943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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