View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6874A_low_81 (Length: 293)

Name: NF6874A_low_81
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6874A_low_81
NF6874A_low_81
[»] chr1 (4 HSPs)
chr1 (23-286)||(29467152-29467415)
chr1 (21-254)||(29452676-29452909)
chr1 (24-231)||(29423828-29424035)
chr1 (21-238)||(29442684-29442901)
[»] chr2 (10 HSPs)
chr2 (22-255)||(14550910-14551143)
chr2 (153-255)||(12005616-12005718)
chr2 (154-255)||(12018381-12018482)
chr2 (153-249)||(11986979-11987075)
chr2 (156-251)||(12012047-12012142)
chr2 (22-77)||(8572827-8572882)
chr2 (197-231)||(8579035-8579069)
chr2 (198-252)||(9365188-9365242)
chr2 (197-251)||(10336378-10336432)
chr2 (22-74)||(9292699-9292751)
[»] chr4 (1 HSPs)
chr4 (201-241)||(55718336-55718376)


Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 23 - 286
Target Start/End: Original strand, 29467152 - 29467415
Alignment:
Q  23 aaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcct 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29467152 aaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcct 29467251  T
Q  123 ttcaaaatccccaacaacttcatctctctgttcggttcatgtaacggccttctctgcatttccaccaatgtcggaatcgctttctggaatcctaacatcc 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29467252 ttcaaaatccccaacaacttcatctctctgttcggttcatgtaacggccttctctgcatttccatcaatgtcggaatcgctttctggaatcctaacatcc 29467351  T
Q  223 gtaaacatcagattattcctaatctccctattcaaactcccgctctttctaaacctaacaccat 286  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29467352 gtaaacatcggattattcctaatctccctattcaaactcctgctctttctaaacctaacaccat 29467415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 21 - 254
Target Start/End: Original strand, 29452676 - 29452909
Alignment:
Q  21 caaaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttc 120  Q
    ||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29452676 caaaattccctcaatcgttccttaatccttcgacacaactctgttttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttc 29452775  T
Q  121 ctttcaaaatccccaacaacttcatctctctgttcggttcatgtaacggccttctctgcatttccaccaatgtcggaatcgctttctggaatcctaacat 220  Q
    |||||||| |||||||||||  ||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||    
T  29452776 ctttcaaactccccaacaacaacatctctctgttcagttcatgtaacggccttctcttcattaccaccaatgtcggaatcgctttctggaaccctaacat 29452875  T
Q  221 ccgtaaacatcagattattcctaatctccctatt 254  Q
    |||||||||||||| |||||||||||||||||||    
T  29452876 ccgtaaacatcagaatattcctaatctccctatt 29452909  T

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Target: chr1; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 24 - 231
Target Start/End: Complemental strand, 29424035 - 29423828
Alignment:
Q  24 aattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcctt 123  Q
    |||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||  | |||||||||||| |||||    
T  29424035 aattccttcaatcgttccttaatccttcgacacaactctgatttctaccaaatcaacgatttctctaacctaactaccgccgttaaactcaatcctcctt 29423936  T
Q  124 tcaaaatccccaacaacttcatctctctgttcggttcatgtaacggccttctctgcatttccaccaatgtcggaatcgctttctggaatcctaacatccg 223  Q
    |||||  | |||||||||||||||||||| |||| ||||||||||||||||||||| | | | || |||  | ||||||||||||||| |||| |||| |    
T  29423935 tcaaaggctccaacaacttcatctctctggtcggatcatgtaacggccttctctgcctcttctccgatggtgaaatcgctttctggaaccctaccatctg 29423836  T
Q  224 taaacatc 231  Q
    ||||||||    
T  29423835 taaacatc 29423828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 21 - 238
Target Start/End: Original strand, 29442684 - 29442901
Alignment:
Q  21 caaaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttc 120  Q
    ||||||| ||||||||||| ||||||||||||||||||||  ||||||||||||||| | ||||||||||||||||||||| || ||||||||||  |||    
T  29442684 caaaatttcctcaatcgttccttaatccttcgacacaactttgatttctaccaaatcgaagatttctctaacctaaccaccggcgttaaactcaacattc 29442783  T
Q  121 ctttcaaaatccccaacaacttcatctctctgttcggttcatgtaacggccttctctgcatttccaccaatgtcggaatcgctttctggaatcctaacat 220  Q
    |||||| |   |||| ||||  ||| |||||  | |||||||||||||||||||||||||||||| ||||||  ||||||||||||||||| ||||||||    
T  29442784 ctttcacaggtcccatcaaccgcatgtctcttctaggttcatgtaacggccttctctgcatttcctccaatgctggaatcgctttctggaaccctaacat 29442883  T
Q  221 ccgtaaacatcagattat 238  Q
    ||||||||| | ||||||    
T  29442884 ccgtaaacaccggattat 29442901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 22 - 255
Target Start/End: Complemental strand, 14551143 - 14550910
Alignment:
Q  22 aaaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcc 121  Q
    |||||||||||||| ||| |||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14551143 aaaattccctcaattgttccttaatccttcgacacaagtccaatctctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcc 14551044  T
Q  122 tttcaaaatccccaacaacttcatctctctgttcggttcatgtaacggccttctctgcatttccaccaatgtcggaatcgctttctggaatcctaacatc 221  Q
    |||| ||  |  ||||||||||||||||||| |||||||||||||||| ||||||| ||| |   |||||| || ||| ||||| ||||| |||||||||    
T  14551043 tttcgaaggcttcaacaacttcatctctctgctcggttcatgtaacggtcttctctacatcttttccaatggcgaaattgctttatggaaccctaacatc 14550944  T
Q  222 cgtaaacatcagattattcctaatctccctattc 255  Q
    ||||||||||  ||||| ||| ||||||||||||    
T  14550943 cgtaaacatcgcattatccctgatctccctattc 14550910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 153 - 255
Target Start/End: Original strand, 12005616 - 12005718
Alignment:
Q  153 ttcggttcatgtaacggccttctctgcatttccaccaatgtcggaatcgctttctggaatcctaacatccgtaaacatcagattattcctaatctcccta 252  Q
    |||||||||||||||||||| |||||||||||| |||| | || |||| |||||||||| ||||||||||||||||||| |||||| |||||||||||||    
T  12005616 ttcggttcatgtaacggcctcctctgcatttcctccaaagccgaaatcactttctggaaccctaacatccgtaaacatcggattatccctaatctcccta 12005715  T
Q  253 ttc 255  Q
    |||    
T  12005716 ttc 12005718  T

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Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 154 - 255
Target Start/End: Original strand, 12018381 - 12018482
Alignment:
Q  154 tcggttcatgtaacggccttctctgcatttccaccaatgtcggaatcgctttctggaatcctaacatccgtaaacatcagattattcctaatctccctat 253  Q
    ||||||||||||||||||| |||||||||||| ||||   || ||||||||||||||| ||| ||||||||||||||| |||||| ||| ||||||||||    
T  12018381 tcggttcatgtaacggcctcctctgcatttcctccaacaacgaaatcgctttctggaacccttacatccgtaaacatcggattatccctcatctccctat 12018480  T
Q  254 tc 255  Q
    ||    
T  12018481 tc 12018482  T

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Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 153 - 249
Target Start/End: Original strand, 11986979 - 11987075
Alignment:
Q  153 ttcggttcatgtaacggccttctctgcatttccaccaatgtcggaatcgctttctggaatcctaacatccgtaaacatcagattattcctaatctcc 249  Q
    |||||||||||||||||||| |||||||||||| ||||   || ||||||||||||||| ||||||| ||||||||||| |||||| ||| ||||||    
T  11986979 ttcggttcatgtaacggcctcctctgcatttcctccaacaacgaaatcgctttctggaaccctaacacccgtaaacatcggattatccctcatctcc 11987075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 251
Target Start/End: Original strand, 12012047 - 12012142
Alignment:
Q  156 ggttcatgtaacggccttctctgcatttccaccaatgtcggaatcgctttctggaatcctaacatccgtaaacatcagattattcctaatctccct 251  Q
    |||||||||||||||||  ||||||||||| | ||   || || ||| |||||||| |||||||||||||||||||||||||| ||||||||||||    
T  12012047 ggttcatgtaacggcctcatctgcatttcctcaaacaccgaaaccgcgttctggaaccctaacatccgtaaacatcagattatccctaatctccct 12012142  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 8572827 - 8572882
Alignment:
Q  22 aaaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatc 77  Q
    |||||||||||||||||| ||||||| |||||| ||||| |||| |||||||||||    
T  8572827 aaaattccctcaatcgttccttaatcattcgacgcaactacgatatctaccaaatc 8572882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 231
Target Start/End: Original strand, 8579035 - 8579069
Alignment:
Q  197 aatcgctttctggaatcctaacatccgtaaacatc 231  Q
    ||||||||||||||| |||||||||||||||||||    
T  8579035 aatcgctttctggaaccctaacatccgtaaacatc 8579069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 252
Target Start/End: Complemental strand, 9365242 - 9365188
Alignment:
Q  198 atcgctttctggaatcctaacatccgtaaacatcagattattcctaatctcccta 252  Q
    |||||||||||||| ||||||||||||||||||| ||| || ||| |||| ||||    
T  9365242 atcgctttctggaaccctaacatccgtaaacatcggatcatcccttatcttccta 9365188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 10336432 - 10336378
Alignment:
Q  197 aatcgctttctggaatcctaacatccgtaaacatcagattattcctaatctccct 251  Q
    |||||| ||||| ||||||| |||||||||||||| |||||| ||| ||||||||    
T  10336432 aatcgcattctgtaatcctaccatccgtaaacatcggattatcccttatctccct 10336378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 9292751 - 9292699
Alignment:
Q  22 aaaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaa 74  Q
    ||||||||||||| || | |||||||||||||||||| | |||| ||||||||    
T  9292751 aaaattccctcaaccgatccttaatccttcgacacaaattcgatctctaccaa 9292699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 241
Target Start/End: Complemental strand, 55718376 - 55718336
Alignment:
Q  201 gctttctggaatcctaacatccgtaaacatcagattattcc 241  Q
    ||||||||||||||||  ||||||||||||| |||||||||    
T  55718376 gctttctggaatcctacgatccgtaaacatcggattattcc 55718336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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