View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6874A_low_96 (Length: 279)

Name: NF6874A_low_96
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6874A_low_96
NF6874A_low_96
[»] chr8 (2 HSPs)
chr8 (7-267)||(43164617-43164877)
chr8 (7-267)||(41310939-41311199)
[»] chr7 (8 HSPs)
chr7 (89-266)||(30165798-30165975)
chr7 (7-76)||(28180965-28181034)
chr7 (152-213)||(30119904-30119965)
chr7 (11-70)||(30125090-30125149)
chr7 (144-194)||(30130917-30130967)
chr7 (7-64)||(30165728-30165785)
chr7 (7-67)||(30120047-30120107)
chr7 (7-66)||(30131048-30131107)
[»] chr2 (2 HSPs)
chr2 (7-64)||(21426649-21426706)
chr2 (144-194)||(21426789-21426839)


Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 7 - 267
Target Start/End: Complemental strand, 43164877 - 43164617
Alignment:
Q  7 attattgcctatgatttaaaggaaaagacaatgtcagagattgctcttccagatgatttttatagtgatttttctcccaacctttatgatttgttggtac 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43164877 attattgcctatgatttaaaggaaaagacaatgtcagagattgctcttccagatgatttttatagtgatttttctcccaacctttatgatttgttggtac 43164778  T
Q  107 ttcgcgggcttatcagcgaatggaatatggagatgtctacacttaagatatgggtaatgcaagaatacgccgtgcattcatcttggaccaagacttttga 206  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  43164777 ttcgcggacttatcagcgtatggaatatggagatgtctacacttaagatatgggtaatgcaagaatacgctgtgcattcatcttggaccaagacttttga 43164678  T
Q  207 tttttcttttgatcctgctccagatttttccccagtatgctttacaaatggtggtgatatt 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43164677 tttttcttttgatcctgctccagatttttccccagtatgctttacaaatggtggtgatatt 43164617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 7 - 267
Target Start/End: Complemental strand, 41311199 - 41310939
Alignment:
Q  7 attattgcctatgatttaaaggaaaagacaatgtcagagattgctcttccagatgatttttatagtgatttttctcccaacctttatgatttgttggtac 106  Q
    |||||||||| |||||||||||||| |||| ||||||||| |||||| ||||||| ||||||||||||||  ||| | |   ||||||||||| |||||     
T  41311199 attattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtat 41311100  T
Q  107 ttcgcgggcttatcagcgaatggaatatggagatgtctacacttaagatatgggtaatgcaagaatacgccgtgcattcatcttggaccaagacttttga 206  Q
    || || | ||||| || | |||||||||||||||| ||||||||||||||||||| ||||||||||||||  | |||||||||||||| |||||||||||    
T  41311099 ttggcagacttattagtgtatggaatatggagatgcctacacttaagatatgggtgatgcaagaatacgcaatacattcatcttggactaagacttttga 41311000  T
Q  207 tttttcttttgatcctgctccagatttttccccagtatgctttacaaatggtggtgatatt 267  Q
    |||||||||| | || | ||| || ||||||||| |||||||||||||| |||| ||||||    
T  41310999 tttttcttttcaccccgatccggagttttccccattatgctttacaaattgtggcgatatt 41310939  T

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Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 89 - 266
Target Start/End: Original strand, 30165798 - 30165975
Alignment:
Q  89 tttatgatttgttggtacttcgcgggcttatcagcgaatggaatatggagatgtctacacttaagatatgggtaatgcaagaatacgccgtgcattcatc 188  Q
    ||||||||||||||||| |||  || |||||||| | ||||||| |||||| ||||||| ||||||||||||| |||||||||||||| |||||||||||    
T  30165798 tttatgatttgttggtatttcatggacttatcagtgtatggaatgtggagaggtctacagttaagatatgggtgatgcaagaatacgcagtgcattcatc 30165897  T
Q  189 ttggaccaagacttttgatttttcttttgatcctgctccagatttttccccagtatgctttacaaatggtggtgatat 266  Q
    |||||| | |||| |||||||||||||| ||||| |||  |||||||| ||| |||||||||||||| | ||||||||    
T  30165898 ttggactacgactcttgatttttcttttcatcctcctctggatttttctccaatatgctttacaaattgcggtgatat 30165975  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 28181034 - 28180965
Alignment:
Q  7 attattgcctatgatttaaaggaaaagacaatgtcagagattgctcttccagatgatttttatagtgatt 76  Q
    |||||||||| |||||||||||||| |||||||||||| || ||||||||||||||||||||||| ||||    
T  28181034 attattgcctttgatttaaaggaaatgacaatgtcagatatagctcttccagatgatttttatagggatt 28180965  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 213
Target Start/End: Complemental strand, 30119965 - 30119904
Alignment:
Q  152 agatatgggtaatgcaagaatacgccgtgcattcatcttggaccaagacttttgatttttct 213  Q
    |||||||||||||||||||||| || ||||||||||||||||  |||||| ||| |||||||    
T  30119965 agatatgggtaatgcaagaatatgcagtgcattcatcttggattaagactcttgttttttct 30119904  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 30125149 - 30125090
Alignment:
Q  11 ttgcctatgatttaaaggaaaagacaatgtcagagattgctcttccagatgatttttata 70  Q
    |||||| |||||||||||||  |||||||||||| || ||||||||| ||||||||||||    
T  30125149 ttgcctttgatttaaaggaagcgacaatgtcagaaatagctcttccaaatgatttttata 30125090  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 194
Target Start/End: Complemental strand, 30130967 - 30130917
Alignment:
Q  144 tacacttaagatatgggtaatgcaagaatacgccgtgcattcatcttggac 194  Q
    |||| ||||||||||||| |||||||||||| | |||||||||||||||||    
T  30130967 tacagttaagatatgggtgatgcaagaatacacagtgcattcatcttggac 30130917  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 30165728 - 30165785
Alignment:
Q  7 attattgcctatgatttaaaggaaaagacaatgtcagagattgctcttccagatgatt 64  Q
    |||||||||| |||||||||||||  ||||||| ||||||| ||||||||| ||||||    
T  30165728 attattgcctttgatttaaaggaagcgacaatggcagagatagctcttccaaatgatt 30165785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 30120107 - 30120047
Alignment:
Q  7 attattgcctatgatttaaaggaaaagacaatgtcagagattgctcttccagatgattttt 67  Q
    |||||||||| |||||||||||||| |||||| |||||||| ||||| ||| | |||||||    
T  30120107 attattgcctttgatttaaaggaaacgacaatatcagagatagctctgccaaaggattttt 30120047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 30131107 - 30131048
Alignment:
Q  7 attattgcctatgatttaaaggaaaagacaatgtcagagattgctcttccagatgatttt 66  Q
    ||||| |||| | |||||||||||| |||||||||||||||  |||||||| ||||||||    
T  30131107 attatagcctttaatttaaaggaaatgacaatgtcagagataactcttccaaatgatttt 30131048  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 21426649 - 21426706
Alignment:
Q  7 attattgcctatgatttaaaggaaaagacaatgtcagagattgctcttccagatgatt 64  Q
    |||||||||  ||||||||||||||  |||||||||||||| ||||||||||||||||    
T  21426649 attattgcccttgatttaaaggaaacaacaatgtcagagatagctcttccagatgatt 21426706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 21426789 - 21426839
Alignment:
Q  144 tacacttaagatatgggtaatgcaagaatacgccgtgcattcatcttggac 194  Q
    |||| ||||||||||| | |||||||||||||| || ||||||||||||||    
T  21426789 tacaattaagatatggatgatgcaagaatacgctgtccattcatcttggac 21426839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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