View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_98 (Length: 277)
Name: NF6874A_low_98
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_98 |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 2003644 - 2003900
Alignment:
| Q |
1 |
aaaggatatattaatttgatattnnnnnnnntgttgcaagttgaagatcaaatttacaatggtggcacagtgggatattttacatgtgtttgagatgata |
100 |
Q |
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| T |
2003644 |
aaaggatatattaatttgatattaaaaaaaatgttgcaagttgaagatcaaatttacaatggtggcacagtgggatattttatatgtgtttgagatgata |
2003743 |
T |
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| Q |
101 |
taaaattacagcttaattaatcatgatacatgtactgaggaatctaagatcactgttgagtatccactatgtaggggtcaacacataagatagcacatgg |
200 |
Q |
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| T |
2003744 |
taaaattacagcttaattaatcatgatacatgtactgaggaatctaagatcattgttaagtatccactatgtaggagtcaacacataagatagcacatgg |
2003843 |
T |
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| Q |
201 |
atcttgaggatgtcctactagaatcacatataatttgtgggatgagaggttagattc |
257 |
Q |
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| T |
2003844 |
atcttggggatgtcctactcgaatcacatataatttgtggcatgagaggttagattc |
2003900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 97 - 233
Target Start/End: Original strand, 2009747 - 2009891
Alignment:
| Q |
97 |
gatataaaattacagcttaattaatcatgatacatgtactgaggaatctaagatcactgt---------tgagtatccactatgtaggggtcaacacata |
187 |
Q |
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| T |
2009747 |
gatataaaattacaccttaattaatcaagatacatgtactaaggaatctaagatcactgcactgttaagtaagtatccattatcc-ggggtcaacacata |
2009845 |
T |
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| Q |
188 |
agatagcacatggatcttgaggatgtcctactagaatcacatataa |
233 |
Q |
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| T |
2009846 |
agatagcacatggatctttgggatgtcctactcgaatcacatataa |
2009891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 78
Target Start/End: Original strand, 2009710 - 2009751
Alignment:
| Q |
37 |
caagttgaagatcaaatttacaatggtggcacagtgggatat |
78 |
Q |
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| T |
2009710 |
caagttgaagatcaaaattacaatggtggcacgatgggatat |
2009751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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