View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6875A_high_10 (Length: 383)

Name: NF6875A_high_10
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6875A_high_10
NF6875A_high_10
[»] chr4 (4 HSPs)
chr4 (31-359)||(5313554-5313886)
chr4 (158-264)||(16839429-16839535)
chr4 (165-355)||(11355130-11355322)
chr4 (46-98)||(11355384-11355436)
[»] chr1 (2 HSPs)
chr1 (156-358)||(30737674-30737880)
chr1 (119-246)||(28451574-28451701)
[»] chr6 (1 HSPs)
chr6 (50-264)||(7499954-7500168)
[»] chr5 (2 HSPs)
chr5 (50-264)||(9504983-9505197)
chr5 (31-174)||(33050399-33050542)
[»] chr2 (3 HSPs)
chr2 (158-264)||(45495640-45495746)
chr2 (158-264)||(45503382-45503488)
chr2 (50-255)||(5986896-5987101)
[»] scaffold0014 (1 HSPs)
scaffold0014 (165-264)||(62533-62632)


Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 31 - 359
Target Start/End: Original strand, 5313554 - 5313886
Alignment:
Q  31 gtatctggatacacgatgctcaaatcacatgacatgtaaaa-agtcttggttctccgagttagatgattcaattagcgaaaagacaagatttgcaaataa 129  Q
    |||| |||||||||||||||||||||| |||||| |||||| ||||||||||||| |||||||||| |||||||||  ||||||||||||||||||||||    
T  5313554 gtatatggatacacgatgctcaaatcatatgacaggtaaaaaagtcttggttctctgagttagatggttcaattagtaaaaagacaagatttgcaaataa 5313653  T
Q  130 tagtatagtttgtgttaaaagaactagtaaagtattgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgaga 229  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||| ||||| | ||||||||||    
T  5313654 tagtatagtttgtgttaaaggaactagtaaagtattgattcatagaaaagatggcaagaaaacatatatcactgatgtattgtatgttcaaaatatgaga 5313753  T
Q  230 agtaatctcattagtataggccaattgctgcaaaatg--tctactacgaaaatggaagcacatgctataaggg-ttttttattgcaagaatagattgatc 326  Q
    |||||||||||||||| ||||||||||||||||||||  | ||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  5313754 agtaatctcattagtacaggccaattgctgcaaaatgtatatactatgaaaatggaagcacatgctacaagggtttttttattgcaagaatagattgatc 5313853  T
Q  327 ttgaaggctccattgtcaaagaagagaactttc 359  Q
    ||||||||||||||||||||||||| |||||||    
T  5313854 ttgaaggctccattgtcaaagaagaaaactttc 5313886  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 158 - 264
Target Start/End: Complemental strand, 16839535 - 16839429
Alignment:
Q  158 aaagtattgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtataggccaattgc 257  Q
    |||||| |||||||||  || |||||||||||||| |  || |||||||| || ||||||||||| |||||||| |||||||||||||| || ||||| |    
T  16839535 aaagtactgattcataagaaggatggcaagaaagcttgcatcactgatgtgttgtatgtaccaaacatgagaagcaatctcattagtattggtcaattac 16839436  T
Q  258 tgcaaaa 264  Q
    |||||||    
T  16839435 tgcaaaa 16839429  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 165 - 355
Target Start/End: Complemental strand, 11355322 - 11355130
Alignment:
Q  165 tgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtataggccaattgctgcaaaa 264  Q
    |||||||| | ||||||||||||||||| |  ||||||| ||| |||||||| ||||| ||||  |||||||||||||||||||| || ||  |||| ||    
T  11355322 tgattcatgggaaagatggcaagaaagcttgcattactggtgtgttatatgtgccaaacatgaagagtaatctcattagtataggtcagttattgcagaa 11355223  T
Q  265 tg--tctactacgaaaatggaagcacatgctataagggttttttattgcaagaatagattgatcttgaaggctccattgtcaaagaagagaac 355  Q
     |  | ||||| ||||||||| | |||  |||| | ||||||| |  ||||||  ||||||||  | |||||||||||||||||||| |||||    
T  11355222 aggctatactatgaaaatggaggaacaaactatgatggtttttgacagcaagagaagattgattctaaaggctccattgtcaaagaaaagaac 11355130  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 11355436 - 11355384
Alignment:
Q  46 atgctcaaatcacatgacatgtaaaaagtcttggttctccgagttagatgatt 98  Q
    ||||||||| ||||||||| |||||| ||| ||||| || |||||||||||||    
T  11355436 atgctcaaagcacatgacaggtaaaatgtcatggttttctgagttagatgatt 11355384  T

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Target: chr1 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 156 - 358
Target Start/End: Original strand, 30737674 - 30737880
Alignment:
Q  156 gtaaagtattgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtataggccaatt 255  Q
    ||||||||||||||||||||||| ||||||||||||||| ||| | |||||| |||||||| |||||||||||||||||||||||||||||||| |||||    
T  30737674 gtaaagtattgattcatagaaaaaatggcaagaaagcatgtatcattgatgtgttatatgtgccaaatatgagaagtaatctcattagtataggtcaatt 30737773  T
Q  256 gctgcaaaatg--tctactacgaaaatggaagcacatgctataaggg--ttttttattgcaagaatagattgatcttgaaggctccattgtcaaagaaga 351  Q
     |||||||| |  | | |||  || ||||||||| |  |||| ||||  |||||||||| ||| |||| |||||| |||| || || ||||||||| |||    
T  30737774 actgcaaaagggttgtgctattaagatggaagcaaaaactatgagggttttttttattggaaggataggttgatcctgaaagccccgttgtcaaagcaga 30737873  T
Q  352 gaacttt 358  Q
    |||||||    
T  30737874 gaacttt 30737880  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 119 - 246
Target Start/End: Complemental strand, 28451701 - 28451574
Alignment:
Q  119 tttgcaaataatagtatagtttgtgttaaaagaactagtaaagtattgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtac 218  Q
    |||||| ||||||| ||||| |||| | || ||| | ||||||||   ||||| | |||||||||||||||||||| ||| ||| |||| || ||||| |    
T  28451701 tttgcagataatagaatagtgtgtgctgaaggaattggtaaagtaccaattcacataaaagatggcaagaaagcatatatcacttatgtgttttatgtgc 28451602  T
Q  219 caaatatgagaagtaatctcattagtat 246  Q
     |||||||||||| ||||| || |||||    
T  28451601 taaatatgagaagcaatcttatgagtat 28451574  T

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Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 50 - 264
Target Start/End: Complemental strand, 7500168 - 7499954
Alignment:
Q  50 tcaaatcacatgacatgtaaaaagtcttggttctccgagttagatgattcaattagcgaaaagacaagatttgcaaataatagtatagtttgtgttaaaa 149  Q
    ||||||||||||||||| || || ||||||||||| || |||||||||||| |||    ||| | |||||||||| | ||| ||||||||||||   |      
T  7500168 tcaaatcacatgacatgcaagaaatcttggttctctgaattagatgattcagttaatagaaaaataagatttgcagagaatcgtatagtttgtgcagatg 7500069  T
Q  150 gaactagtaaagtattgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtatagg 249  Q
    | | | | |||||| |||||||||| || |||| ||||||||| |  || |||||||| || ||||||||||| |||||||| |||||||||||||| ||    
T  7500068 gtattgggaaagtactgattcataggaaggatgacaagaaagcttgcatcactgatgtgttgtatgtaccaaacatgagaagcaatctcattagtattgg 7499969  T
Q  250 ccaattgctgcaaaa 264  Q
      |||| ||||||||    
T  7499968 ttaattactgcaaaa 7499954  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 264
Target Start/End: Original strand, 9504983 - 9505197
Alignment:
Q  50 tcaaatcacatgacatgtaaaaagtcttggttctccgagttagatgattcaattagcgaaaagacaagatttgcaaataatagtatagtttgtgttaaaa 149  Q
    ||||||||||||||||| || || ||||||||||| || |||||||||||| |||    ||| | |||||||||| | |||| |||||||||||          
T  9504983 tcaaatcacatgacatgcaagaaatcttggttctctgaattagatgattcagttaatagaaaaataagatttgcagacaatattatagtttgtgcagctg 9505082  T
Q  150 gaactagtaaagtattgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtatagg 249  Q
    | | | | |||||| | |||||||| || |||| ||||||||| |  || |||||||| || ||||||||||| |||||||| |||||||||||||| ||    
T  9505083 gtattgggaaagtactaattcataggaaggatgtcaagaaagcttgcatcactgatgtgttgtatgtaccaaacatgagaagcaatctcattagtattgg 9505182  T
Q  250 ccaattgctgcaaaa 264  Q
     ||||| || |||||    
T  9505183 tcaattactacaaaa 9505197  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 31 - 174
Target Start/End: Original strand, 33050399 - 33050542
Alignment:
Q  31 gtatctggatacacgatgctcaaatcacatgacatgtaaaaagtcttggttctccgagttagatgattcaattagcgaaaagacaagatttgcaaataat 130  Q
    ||||||||||||| ||||||||||| |||| |||||| |||||||||||| |||  | |||||| |||||||||    ||||| |||||| ||| |||||    
T  33050399 gtatctggatacatgatgctcaaattacataacatgttaaaagtcttggtactctaaattagattattcaattaatagaaagataagattcgcagataat 33050498  T
Q  131 agtatagtttgtgttaaaagaactagtaaagtattgattcatag 174  Q
    ||||| | || |||| || ||| | |||| || |||||||||||    
T  33050499 agtatcgattatgttgaaggaaatggtaatgtgttgattcatag 33050542  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 158 - 264
Target Start/End: Complemental strand, 45495746 - 45495640
Alignment:
Q  158 aaagtattgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtataggccaattgc 257  Q
    |||||| |||||||||| || |||||||||||||| |  || | |||||| || ||||||||||| |||||||| |||||||||||||| || ||||| |    
T  45495746 aaagtactgattcataggaaggatggcaagaaagcttgcatcattgatgtgttgtatgtaccaaacatgagaagcaatctcattagtattggtcaattac 45495647  T
Q  258 tgcaaaa 264  Q
    |||||||    
T  45495646 tgcaaaa 45495640  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 158 - 264
Target Start/End: Complemental strand, 45503488 - 45503382
Alignment:
Q  158 aaagtattgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtataggccaattgc 257  Q
    |||||| |||||||||| || |||||||||||||| |  || | |||||| || ||||||||||| |||||||| |||||||||||||| || ||||| |    
T  45503488 aaagtactgattcataggaaggatggcaagaaagcttgcatcattgatgtgttgtatgtaccaaacatgagaagcaatctcattagtattggtcaattac 45503389  T
Q  258 tgcaaaa 264  Q
    |||||||    
T  45503388 tgcaaaa 45503382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 50 - 255
Target Start/End: Original strand, 5986896 - 5987101
Alignment:
Q  50 tcaaatcacatgacatgtaaaaagtcttggttctccgagttagatgattcaattagcgaaaagacaagatttgcaaataatagtatagtttgtgttaaaa 149  Q
    |||||||||||||||   || || ||||||||||| || |||||||||||| ||| |  ||| | |||||||||| | ||||||||||||||||     |    
T  5986896 tcaaatcacatgacagacaagaaatcttggttctctgaattagatgattcagttaacagaaaaataagatttgcagacaatagtatagtttgtgcagcta 5986995  T
Q  150 gaactagtaaagtattgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtatagg 249  Q
      | | | |||||| |||||||||| || |||||||||||||| |  || |||||||| || ||||||||||| |||||||  | |||||||||||| ||    
T  5986996 atattggaaaagtactgattcataggaaggatggcaagaaagcttgcatcactgatgtgttgtatgtaccaaacatgagaaacagtctcattagtattgg 5987095  T
Q  250 ccaatt 255  Q
     |||||    
T  5987096 tcaatt 5987101  T

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Target: scaffold0014 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 165 - 264
Target Start/End: Original strand, 62533 - 62632
Alignment:
Q  165 tgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtataggccaattgctgcaaaa 264  Q
    |||||||||| || |||||||||| ||| |  || |||||||| || ||||||||||| |||||||| ||||||| |||||| || |||||  |||||||    
T  62533 tgattcataggaaggatggcaagagagcctgcatcactgatgtgttgtatgtaccaaacatgagaagcaatctcagtagtattggtcaattattgcaaaa 62632  T

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