View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_high_2 (Length: 492)
Name: NF6875A_high_2
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 2e-78; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 35 - 203
Target Start/End: Original strand, 36570713 - 36570881
Alignment:
| Q |
35 |
accaccaactgaaaaggcaaaaattatcagcagccacaactccttgtttctactacccattcaattaaaattgattttcaccaaaaactccttatttcct |
134 |
Q |
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| T |
36570713 |
accaccaactgaaaaagcaaacattatcagcatccacaactccttgtttctactacccattcaattaaaattgattttcaccaaaaactccttatttccg |
36570812 |
T |
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| Q |
135 |
gatgaacatttgatgatattgtgttcttcagatctgcattgataaaccctttatttctgtaattttgaa |
203 |
Q |
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| T |
36570813 |
gatgaacatttgatgatattgtgttcttcagatctgcattgataaaccctttatttctggaattttgaa |
36570881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 144; Significance: 2e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 35 - 206
Target Start/End: Complemental strand, 52603896 - 52603725
Alignment:
| Q |
35 |
accaccaactgaaaaggcaaaaattatcagcagccacaactccttgtttctactacccattcaattaaaattgattttcaccaaaaactccttatttcct |
134 |
Q |
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| T |
52603896 |
accaccaactgaaaaggcaaacattatcaacagccacaactccttgtttctactacccattcaattaaaattgattttcgccaaaaactccttctttcct |
52603797 |
T |
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| Q |
135 |
gatgaacatttgatgatattgtgttcttcagatctgcattgataaaccctttatttctgtaattttgaatct |
206 |
Q |
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| T |
52603796 |
gatgaacatttgatgatattgtgttcttcagatctacattgataaaacctttatttctggaattttgaatct |
52603725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 36 - 94
Target Start/End: Original strand, 32453637 - 32453695
Alignment:
| Q |
36 |
ccaccaactgaaaaggcaaaaattatcagcagccacaactccttgtttctactacccat |
94 |
Q |
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| T |
32453637 |
ccaccaactgaaaaggcaagcattatcagcagcagcaactccttgtttctaccacccat |
32453695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 308 - 357
Target Start/End: Original strand, 39233688 - 39233737
Alignment:
| Q |
308 |
atgttatggaaaaattatttcaagatttttgtgtatttactatgtagcta |
357 |
Q |
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| T |
39233688 |
atgttatggaaaaattgtttcaagatttttgtgtatttatcatgtagcta |
39233737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 429 - 486
Target Start/End: Original strand, 39233790 - 39233847
Alignment:
| Q |
429 |
ttaagtatgtttctttccaaaagtttgatgtcatattcactaacaataatcagagttt |
486 |
Q |
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|||||| || |||||||||||||||||||| ||||||||||| || ||||| |||||| |
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| T |
39233790 |
ttaagtctggttctttccaaaagtttgatgccatattcactagcattaatctgagttt |
39233847 |
T |
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