View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6875A_high_24 (Length: 280)
Name: NF6875A_high_24
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_high_24 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 21 - 274
Target Start/End: Complemental strand, 49007526 - 49007273
Alignment:
| Q |
21 |
tttcaagcactggtcctctgttccctgcagatgtagctacaaaaatgtttttctccatagctgcaaatgtggctatagctacaggatcttcatacaaagg |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49007526 |
tttcaagcactggtcctctgttccctgcagatgtagatacaaaaatgtttttctccatagctgcaaatgtggctatagctacaggatcttcatacaaagg |
49007427 |
T |
|
| Q |
121 |
tgcctcatcaaaccccaatgataatgaaagaacatctacaccatctgatattgcactatcaattgcagctattgtatcagatgcatatgctccttctttc |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49007426 |
tgcctcatcaaaccccaatgataatgaaagaacatctacaccatctgatattgcactatcaattgcagctattgtatcagatgcatatgctccttctttc |
49007327 |
T |
|
| Q |
221 |
cacaacaccttgtacatggatacatgagcatgtggagccatgcatattcttcga |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
49007326 |
cacaacaccttgtacatggatacatgagcatgtggagccatgcctattattcga |
49007273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 74 - 203
Target Start/End: Original strand, 34963365 - 34963494
Alignment:
| Q |
74 |
tccatagctgcaaatgtggctatagctacaggatcttcatacaaaggtgcctcatcaaaccccaatgataatgaaagaacatctacaccatctgatattg |
173 |
Q |
| |
|
||||||||||||||||| ||||||||||| | |||||||||||||||| | |||| || || ||||||||||||| |||||| ||||| || ||||||| |
|
|
| T |
34963365 |
tccatagctgcaaatgttgctatagctacggcatcttcatacaaaggtacgtcattaattccaaatgataatgaaataacatcgacaccgtcggatattg |
34963464 |
T |
|
| Q |
174 |
cactatcaattgcagctattgtatcagatg |
203 |
Q |
| |
|
|| ||||||||||||||| |||||||| |
|
|
| T |
34963465 |
cagcgtcaattgcagctattacatcagatg |
34963494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 74 - 203
Target Start/End: Complemental strand, 8957476 - 8957347
Alignment:
| Q |
74 |
tccatagctgcaaatgtggctatagctacaggatcttcatacaaaggtgcctcatcaaaccccaatgataatgaaagaacatctacaccatctgatattg |
173 |
Q |
| |
|
||||||||||||||||| || || || |||||||| ||||||||||| | |||| || || ||||||| |||||||||||| ||||| |||||||||| |
|
|
| T |
8957476 |
tccatagctgcaaatgttgcaatggcaacaggatcgtcatacaaaggcacgtcattaataccaaatgatagtgaaagaacatcaacaccgtctgatattg |
8957377 |
T |
|
| Q |
174 |
cactatcaattgcagctattgtatcagatg |
203 |
Q |
| |
|
| |||||||| |||||| |||||||| |
|
|
| T |
8957376 |
ccgcgtcaattgcggctattacatcagatg |
8957347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 203
Target Start/End: Complemental strand, 8962424 - 8962358
Alignment:
| Q |
137 |
aatgataatgaaagaacatctacaccatctgatattgcactatcaattgcagctattgtatcagatg |
203 |
Q |
| |
|
||||||| |||||||||||| ||||| ||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
8962424 |
aatgatattgaaagaacatccacaccgtctgatattgcggcatcaattgcagctattgtgtcagatg |
8962358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 203
Target Start/End: Original strand, 8946675 - 8946732
Alignment:
| Q |
146 |
gaaagaacatctacaccatctgatattgcactatcaattgcagctattgtatcagatg |
203 |
Q |
| |
|
||||||||||| ||||| || ||||||||| |||||||||||| ||| ||||||||| |
|
|
| T |
8946675 |
gaaagaacatcaacaccgtccgatattgcagcatcaattgcagccattatatcagatg |
8946732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 203
Target Start/End: Original strand, 21687718 - 21687877
Alignment:
| Q |
44 |
cctgcagatgtagctacaaaaatgtttttctccatagctgcaaatgtggctatagctacaggatcttcatacaaaggtgcctcatcaaaccccaatgata |
143 |
Q |
| |
|
|||||||| |||| |||||||| ||| ||||||||||||||||| || || || || ||||||| ||||||| | |||||| | || | ||||| |
|
|
| T |
21687718 |
cctgcagaagtagacacaaaaatacctttttccatagctgcaaatgtcgcaattgcaactggatctttatacaaaagaagatcatcagagccaagtgata |
21687817 |
T |
|
| Q |
144 |
atgaaagaacatctacaccatctgatattgcactatcaattgcagctattgtatcagatg |
203 |
Q |
| |
|
|||||||| || ||||| || ||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
21687818 |
ttgaaagaatgtcaacaccgtcagatattgcagcatcaattgcagctattatatcagatg |
21687877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University