View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_1 (Length: 617)
Name: NF6875A_low_1
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_1 |
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| [»] scaffold1075 (1 HSPs) |
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Alignment Details
Target: scaffold1075 (Bit Score: 528; Significance: 0; HSPs: 1)
Name: scaffold1075
Description:
Target: scaffold1075; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 5 - 573
Target Start/End: Original strand, 2483 - 3050
Alignment:
| Q |
5 |
taggtaatgttgtccgaatggctaatggtagaagttgttccatcaatatgtggccatcatgactcttcaacgttcctttcaacttaagagcttctaagtc |
104 |
Q |
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| T |
2483 |
taggtaatgttgtccgaatggctaatggtagaagttgttccatcaatatgtggccatcatgactcttcaacgttcctttcaacttaagagcttctaagtc |
2582 |
T |
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| Q |
105 |
aatgcatctagaaatgttgcttgaataaccatcaggcactgtgatattctttaaaattgttaaaaattccctcttacttttaccagtcaaagtaaaaatt |
204 |
Q |
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| T |
2583 |
aatgcatctagaaatgttgcttgaataaccatcaggcactgtgatattctttaaaattgttaaaaaatccctcttacttttaccagtcaaagtaaaaatt |
2682 |
T |
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| Q |
205 |
gccggagaaatttttccattttcattgcaccaaaggtcagatcttatgcccataacttcaaggtctctacgagcatcaacatggtctttactctttgaac |
304 |
Q |
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| T |
2683 |
gccggagaaatttttccattttcattgcaccaaaggtcagatcttatgcccataacttcaaggtctctacgagcatcaacatggtctttactctttgaac |
2782 |
T |
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| Q |
305 |
tatcgttaagcaaagtatatatgatattatccaacacatttttctcaatatgcatcgggtcaagattatgacgcagaagattgtccttccaatatggaag |
404 |
Q |
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| T |
2783 |
tatcgttaagcaaagtatatatgatattatccaacacatttttctcgatatgcatcgggtcaagattatgacgcagaagattgtccttccaatatggaag |
2882 |
T |
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| Q |
405 |
ttcaaagaatatgcttttcttcttccagattggagggtcatcttttgtagattgcctcttacctgtccnnnnnnnnctggtttggagggtcaccttgtgt |
504 |
Q |
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| T |
2883 |
ttcaaagaatatgcttttcttcttccagattggagggtcatcttttgtagattgcctcttgcctgtcc-tttttttctggtttggagggtcaccttgtgt |
2981 |
T |
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| Q |
505 |
aggttgtttcttgccttttctttttcccaaccctgctttctttggctttttaccaaaaatgacctttat |
573 |
Q |
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| T |
2982 |
aggttgtttcttgccttttctttttcccaaccctgctttctttggctttttaccaaaaatgacctttat |
3050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 7 - 604
Target Start/End: Complemental strand, 17006612 - 17006016
Alignment:
| Q |
7 |
ggtaatgttgtccgaatggctaatggtagaagttgttccatcaatatgtggccatcatgactcttcaacgttcctttcaacttaagagcttctaagtcaa |
106 |
Q |
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| T |
17006612 |
ggtaatgttgtccgaatggctaatggtagaagttgttccattaatatgtggccatcatgactcttcaacattcctttcaacttaagagcttccaagtcaa |
17006513 |
T |
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| Q |
107 |
tgcatctagaaatgttgcttgaataaccatcaggcactgtgatattctttaaaattgttaaaaattccctcttacttttaccagtcaaagtaaaaattgc |
206 |
Q |
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| T |
17006512 |
tgcatctagaaatgttgcttgaataaccatccggcactgtgatattctttaaaattgttaaaaattccctcttacatttaccagtcaaagtaaaaattgt |
17006413 |
T |
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| Q |
207 |
cggagaaatttttccattttcattgcaccaaaggtcagatcttatgcccataacttcaaggtctctacgagcatcaacatggtctttactctttgaacta |
306 |
Q |
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| T |
17006412 |
cggagaaatttttccattttcattgcaccaaaggtcagatcttatgcccataacttcaaggtctcttcgagcatcaacatggtctttattctttgaacta |
17006313 |
T |
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| Q |
307 |
tcgttaagcaaagtatatatgatattatccaacacatttttctcaatatgcatcgggtcaagattatgacgcagaagattgtccttccaatatggaagtt |
406 |
Q |
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| T |
17006312 |
tcgttaagcaaagtatatatgatattatccaacacatttttctcgatatgcatcgggtcaagattatgacgcaaaagattgtccttccaatatggaagtt |
17006213 |
T |
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| Q |
407 |
caaagaatatgcttttcttcttccagattggagggtcatcttttgtagattgcctcttacctgtccnnnnnnnnctggtttggagggtcaccttgtgtag |
506 |
Q |
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| T |
17006212 |
caaagaatatgcttttcttcttctagattggagggtcatcttttgtagattgcctcttgcctgtcc-tttttttctggtttggagggtcaccttgtgtag |
17006114 |
T |
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| Q |
507 |
gttgtttcttgccttttctttttcccaaccctgctttctttggctttttaccaaaaatgacctttatgttttcaacctgttcaagaacttgatgtcca |
604 |
Q |
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| T |
17006113 |
gttgtttcttgccttttctttttcccaaccctgctttctttggctttttaccaaaaatgacctttatgttttcaacctgttgaagaacttgatgtcca |
17006016 |
T |
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