View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_101 (Length: 299)
Name: NF6875A_low_101
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_101 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 31819693 - 31819464
Alignment:
| Q |
1 |
ggatcacagatgtagagagtcttatccttgagggagagatgatgtgacatcttgagtgtgagttaaagtctcacattgaatgtaagtgctgaggttgaac |
100 |
Q |
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| T |
31819693 |
ggatcacagatgtagagagtcttatccttgagggagagatgatgtgacatgctaagtgtgagttaaagtctcacattgaatgtaagtgctgaggttgaac |
31819594 |
T |
|
| Q |
101 |
aacatataattgagagaacccataannnnnnngtgaaaaggtgatgcgcaactcacttgcatgattgtttttacatcacaaatttgctaaatgaaaatat |
200 |
Q |
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| T |
31819593 |
aacatataattgagagaatccataa-ttttttgtgaaaatgtgatgcgcaactcacttgcatgattgtttttacatcacaaatttgctaaatgaaaatat |
31819495 |
T |
|
| Q |
201 |
gtgttagacatccaacgagtgtatacacctt |
231 |
Q |
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| T |
31819494 |
gtgttagacatccaacgagtgtatacacctt |
31819464 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 125
Target Start/End: Complemental strand, 45668511 - 45668476
Alignment:
| Q |
90 |
tgaggttgaacaacatataattgagagaacccataa |
125 |
Q |
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| T |
45668511 |
tgaggttgaacaacatataattgagagaactcataa |
45668476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 109
Target Start/End: Complemental strand, 2517474 - 2517422
Alignment:
| Q |
57 |
tgtgagttaaagtctcacattgaatgtaagtgctgaggttgaacaacatataa |
109 |
Q |
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| T |
2517474 |
tgtgagttaaagtcccacattgaatgaaagagttaaggttgagcaacatataa |
2517422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 125
Target Start/End: Original strand, 17772580 - 17772650
Alignment:
| Q |
55 |
agtgtgagttaaagtctcacattgaatgtaagtgctgaggttgaacaacatataattgagagaacccataa |
125 |
Q |
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||||||||||||||||||||||| ||| ||||| | || |||| |||||||||| ||| ||||| ||||| |
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| T |
17772580 |
agtgtgagttaaagtctcacatttgatggaagtgttaagattgagcaacatataaatgatagaactcataa |
17772650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 125
Target Start/End: Original strand, 11442859 - 11442928
Alignment:
| Q |
56 |
gtgtgagttaaagtctcacattgaatgtaagtgctgaggttgaacaacatataattgagagaacccataa |
125 |
Q |
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||||||||||||||| ||| ||| ||| ||| | ||||||||| ||||||| || |||||| |||||||| |
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| T |
11442859 |
gtgtgagttaaagtcccacgttggatggaagagttgaggttgagcaacatacaagtgagaggacccataa |
11442928 |
T |
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