View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6875A_low_111 (Length: 291)
Name: NF6875A_low_111
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_111 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 156; Significance: 6e-83; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 16 - 224
Target Start/End: Complemental strand, 23915414 - 23915210
Alignment:
| Q |
16 |
atgcatgagtcgcacctcgtcatagtacgtcattactggtatgaactgagttactaacaaaaaaccaagaatattaatggtgaatgaatttctttctgac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23915414 |
atgcatgagtcgcacctcgtcatagtacgtcattactggtatgaactgagttactaacaaaaaaccaagaatattaatggtgaatgaatttctttctgac |
23915315 |
T |
|
| Q |
116 |
tacattcattgacttattttgactgagtgaagtccttnnnnnnnnggtactgcatcataatgcctataaattaagaaccctaagtaacgtctcttcttca |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||| |||| || |
|
|
| T |
23915314 |
tacattcattgacttattttgactgagtgaagtccttaaaaaaaaggtactgcattataatgcctataaattaagaaccc----taacgtctattctcca |
23915219 |
T |
|
| Q |
216 |
ttctcctca |
224 |
Q |
| |
|
||||||||| |
|
|
| T |
23915218 |
ttctcctca |
23915210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 226 - 286
Target Start/End: Complemental strand, 23915185 - 23915125
Alignment:
| Q |
226 |
aagagaaaatggcatcttcaacttatttatccattttgctcaccatttcaatgatctttat |
286 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23915185 |
aagagaaaatggcatcttcaacctatttatccattttgctcaccatttcaatgatctttat |
23915125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 226 - 284
Target Start/End: Complemental strand, 23922834 - 23922776
Alignment:
| Q |
226 |
aagagaaaatggcatcttcaacttatttatccattttgctcaccatttcaatgatcttt |
284 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
23922834 |
aagagaaaatggcatcttcagcctatttatccattttgctcaccatttcaatgatcttt |
23922776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 224
Target Start/End: Complemental strand, 23922935 - 23922872
Alignment:
| Q |
161 |
ggtactgcatcataatgcctataaattaagaaccctaagtaacgtctcttcttcattctcctca |
224 |
Q |
| |
|
|||||| ||| |||||||||||| |||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
23922935 |
ggtactacattataatgcctatatattaagaaccctaagtaacgtctcttctccactctcctca |
23922872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 142
Target Start/End: Complemental strand, 23923022 - 23922954
Alignment:
| Q |
74 |
aaaaaaccaagaatattaatggtgaatgaatttctttctgactacattcattgacttattttgactgag |
142 |
Q |
| |
|
||||||||||||||||||||||||| | |||| |||||||||||||||||| ||| ||||||| |||| |
|
|
| T |
23923022 |
aaaaaaccaagaatattaatggtgactttatttgtttctgactacattcattaactcattttgattgag |
23922954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 25803278 - 25803226
Alignment:
| Q |
234 |
atggcatcttcaacttatttatccattttgctcaccatttcaatgatctttat |
286 |
Q |
| |
|
|||||| ||||||| |||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
25803278 |
atggcaccttcaacatatttatcatttttgctcaccatttcaatgatgtttat |
25803226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University