View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_117 (Length: 288)
Name: NF6875A_low_117
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_117 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 7 - 276
Target Start/End: Complemental strand, 56045570 - 56045301
Alignment:
| Q |
7 |
ctttgtcgtgtcatacttgtgtccacttgacgtgaacaactgattagagaatataggaaacttcctagcatcaaaagcgttaaacctccagtaacatacg |
106 |
Q |
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| T |
56045570 |
ctttgtcgtgtcatacttgtgtccacttgacgtgaacaactgattagagaatataggaaacttcctagcatcaaaagtgttaaacctccagtaacatacg |
56045471 |
T |
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| Q |
107 |
ggtagaattatatagatgaacatgataaatccaaccccaacattagcaatggaagtccacggtgcaacaagtgggcttccatgataagctgaaattccag |
206 |
Q |
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| T |
56045470 |
ggtagaattatatagatgaacatgataaatccaaccccaacattaacaatggaagtccacggtgcaacaagtgggcttccatgataagctgaaattccag |
56045371 |
T |
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| Q |
207 |
cccaatcaagtgtgaatgcaccaattccaagtccatggtaacctgatccaatttgttgtgctgtgatatt |
276 |
Q |
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| T |
56045370 |
cccaatcaagtgtgaatgcaccaattccaagtccatggtaacctgatccaatttgttgtgctgtgatatt |
56045301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 26 - 222
Target Start/End: Complemental strand, 55707012 - 55706814
Alignment:
| Q |
26 |
tgtccacttgacgtgaacaactgattagagaatataggaaacttcctagcatcaaaagc-gttaaacctccagtaacat-acgggtagaattatatagat |
123 |
Q |
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|||||||| || ||||||||||||||||| | |||||||||||||||||||||||||| ||||||| |||| |||||| | | ||||||||||||||| |
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| T |
55707012 |
tgtccactggatgtgaacaactgattagaaagtataggaaacttcctagcatcaaaaggtgttaaacttccactaacattatagatagaattatatagat |
55706913 |
T |
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| Q |
124 |
gaacatgataaatccaaccccaacattagcaatggaagtccacggtgcaacaagtgggcttccatgataagctgaaattccagcccaatcaagtgtgaa |
222 |
Q |
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| T |
55706912 |
gaacaagataaatccaacccaaacattaacagtggaagaccacggtgtaacaagagggcttccatgataagctgaaatccaagcgcagtcaagtgtgaa |
55706814 |
T |
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