View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_118 (Length: 288)
Name: NF6875A_low_118
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_118 |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 12 - 282
Target Start/End: Complemental strand, 16569668 - 16569398
Alignment:
| Q |
12 |
aagaacgtcaaaatgtacatgtttactatttacgctaatgtaaactaatttctgtgttctttctcgcttatccgtgctttgtctccactagttatatagt |
111 |
Q |
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| T |
16569668 |
aagaacgtcaaaatgtacatgtttactatttacgctaatgtaaactaatttctgtgttttttctcgcttatccgtgctttgtctcaaatagttataaagt |
16569569 |
T |
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| Q |
112 |
cttctttgtttccctcatcaattatagttgtttacactatctgcaggaaacacttcacaatcacaatggtagcgaagaatccaaaggtgatgcagaagct |
211 |
Q |
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| T |
16569568 |
cttctttgtttccctcatcaattatagatgtttacactatctgcaggaaacacttcacaatcacaatggtagcgaagaatccaaaggtgatgcggaagct |
16569469 |
T |
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| Q |
212 |
ttcgaaaatggaagcggtaaagaaagaacagtccaaaagaatgaaaacctcttcatgaattggcctttaat |
282 |
Q |
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| T |
16569468 |
ttagaaaatggaagcagtaaagaaagaacagtccaaaagaatgaaaacctcttcatgaattggcctttaat |
16569398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 54 - 282
Target Start/End: Complemental strand, 16528127 - 16527899
Alignment:
| Q |
54 |
aactaatttctgtgttctttctcgcttatccgtgctttgtctccactagttatatagtcttctttgtttccctcatcaattatagttgtttacactatct |
153 |
Q |
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| T |
16528127 |
aactaatttctgtgttttttctatcttatccgtgctttgtctccactgttcatataatcgtctctgtttccctcatcaattatagttgtgtacactatct |
16528028 |
T |
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| Q |
154 |
gcaggaaacacttcacaatcacaatggtagcgaagaatccaaaggtgatgcagaagctttcgaaaatggaagcggtaaagaaagaacagtccaaaagaat |
253 |
Q |
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| T |
16528027 |
gcaggaaacacttcacaatcacaatggtaacaaagagtccacagatgacgccgaagctttagaaaatggaagcaacaaagaaaagacagtccgaaagaat |
16527928 |
T |
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| Q |
254 |
gaaaacctcttcatgaattggcctttaat |
282 |
Q |
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| T |
16527927 |
gaaaacctctttatgaattggcctttaat |
16527899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 128 - 282
Target Start/End: Complemental strand, 16588250 - 16588097
Alignment:
| Q |
128 |
atcaattatagttgtttacactatctgcaggaaacacttcacaatcacaatggtagcgaagaatccaaaggtgatgcagaagctttcgaaaatggaagcg |
227 |
Q |
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| T |
16588250 |
atcaattatagttattaa-actatccgcaggaaacacttcacaatcacaatggtaacgaagagtccaaaggtaatgccgaagctttagaaaatggaagca |
16588152 |
T |
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| Q |
228 |
gtaaagaaagaacagtccaaaagaatgaaaacctcttcatgaattggcctttaat |
282 |
Q |
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| T |
16588151 |
gcaaagaaaagacagttcaaaagaatgaaaacctctttttgaattggcctttaat |
16588097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 276
Target Start/End: Complemental strand, 16519603 - 16519471
Alignment:
| Q |
153 |
tgcaggaaacacttcacaatcacaatggtagcgaagaatccaaaggtgatgcagaagctttcgaaaatggaagc-----ggt----aaagaaagaacagt |
243 |
Q |
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||||||||||||||||||| |||||||||||| || |||| || |||||| |||||| | |||||||||||| ||| ||||||| | ||| |
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| T |
16519603 |
tgcaggaaacacttcacaagcacaatggtagcagtgagtccatagatgatgctgaagctatagaaaatggaagcaaaaaggttgacaaagaaaagatagt |
16519504 |
T |
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| Q |
244 |
ccaaaagaatgaaaacctcttcatgaattggcc |
276 |
Q |
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| T |
16519503 |
tcaaaagaatgaaaacctcttgatgaattggcc |
16519471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 282
Target Start/End: Original strand, 9008905 - 9008958
Alignment:
| Q |
229 |
taaagaaagaacagtccaaaagaatgaaaacctcttcatgaattggcctttaat |
282 |
Q |
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| T |
9008905 |
taaagaaaatacagtccaaaagaatgaaattctcttcaggaattggcctttaat |
9008958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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