View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_121 (Length: 287)
Name: NF6875A_low_121
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_121 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 10 - 281
Target Start/End: Original strand, 22291871 - 22292126
Alignment:
| Q |
10 |
aaaagaatataaacttggaaataatgaaagttgagaaataagagaagatgaaagtgaggggtgaaactgagaatgaaaccgaatggttttcattcatttg |
109 |
Q |
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| T |
22291871 |
aaaagcatataaacttggaaataatgaaaggtgagaaataagagaaga----------------aactgagaatgaaaccgaatggttttcattcatttg |
22291954 |
T |
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| Q |
110 |
gctttgatgtgaagggtgaggcttctggtgaattcttgaggtcaaatacaacaacaaaattagtggatccgattcaatcaactattaccctgttctcatc |
209 |
Q |
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| T |
22291955 |
gctttgatgtgaagggtgaggcttctggtgaattcttgaagtcaaatacaacaacaaaattagtggatccgattcaatcaactattaccctgttctcatc |
22292054 |
T |
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| Q |
210 |
agagacccaaatgtgattgtgttgtgaatctatttgcaaatttacataattaatgaatggaattgaagaaac |
281 |
Q |
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| T |
22292055 |
agagccccaaatgtgattgtgttgtgaatctaattgcaaatttacaaaattaatgaatgcaattgaagaaac |
22292126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 51 - 147
Target Start/End: Original strand, 53559297 - 53559393
Alignment:
| Q |
51 |
gagaagatgaaagtgaggggtgaaactgagaatgaaaccgaatggttttcattcatttggctttgatgtgaagggtgaggcttctggtgaattcttg |
147 |
Q |
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| T |
53559297 |
gagaagatgaaagtgaggggtgaaactgagattgaaaccgaatggttttcattcatttggctttgatgtgaggggtcaggcttctggtgaattcttg |
53559393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 187 - 281
Target Start/End: Complemental strand, 17682554 - 17682459
Alignment:
| Q |
187 |
tcaactattaccctgttctcatcagagacccaaatgtgattgtgttgtgaatctatttgcaaattta-cataattaatgaatggaattgaagaaac |
281 |
Q |
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| T |
17682554 |
tcaactatgaccctattctcgtcagagacccaaatctgactgtgttgtgaacctaattgcaaatttattaccaataatgaatggaattgaagaaac |
17682459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 17682599 - 17682568
Alignment:
| Q |
50 |
agagaagatgaaagtgaggggtgaaactgaga |
81 |
Q |
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| T |
17682599 |
agagaagatgaaagtgaggggtgaaactgaga |
17682568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 181 - 281
Target Start/End: Original strand, 15434052 - 15434152
Alignment:
| Q |
181 |
attcaatcaactattaccctgttctcatcagagacccaaatgtgattgtgttgtgaatctatttgcaaatttacataattaatgaatggaattgaagaaa |
280 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
15434052 |
attcaatcaactattagcctgttctcatcagagacccaaatctgattctgttgtgaatctaattgcaaatttacaaaattaatgaatggaattgaagaaa |
15434151 |
T |
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| Q |
281 |
c |
281 |
Q |
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| T |
15434152 |
c |
15434152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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