View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_126 (Length: 282)
Name: NF6875A_low_126
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_126 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 35006237 - 35005972
Alignment:
| Q |
1 |
tcaaaagagctgtaaactagaggaatttctttaaagcactcagtgaacgtcacacagcctacacaaagtgcagacatagcacatggcatgtacaaaagta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| | |
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| T |
35006237 |
tcaaaagagctgtaaactagaggaatttctttaaagcactcagtgaacgtcacacagcctacacaaagtgcaaacatagcacacggcatgtacaaaagaa |
35006138 |
T |
|
| Q |
101 |
ttcgctcattcgatgttgaatatccctgcacaataaggaacagaaaactgaagcaaatgcctatatattattgtaagttatagtgtatgtgaacataatg |
200 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35006137 |
ttcgctcattcgatgaggaatatccctgcacaataaggaacagaaaactgaagcaaatgcctatatattattgtaagttatagtgtatgtgaacataatg |
35006038 |
T |
|
| Q |
201 |
ctattacatattagtgcaagtgtataatatcgtaatactaaatcaacgggtagtggtgccctttta |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35006037 |
ctattacatattagtgcaagtgtataatatcgtaatactaaatcaacgggtagtggtgccctttta |
35005972 |
T |
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