View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_127 (Length: 281)
Name: NF6875A_low_127
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_127 |
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| [»] scaffold0174 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 5 - 271
Target Start/End: Complemental strand, 48823975 - 48823701
Alignment:
| Q |
5 |
gaacgctttcgttcgactcttattttaatttggctaacgtacacttgagtgtta--------tggaaaaaacataataatatgatttttaataacaaggc |
96 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||| || |||||||||||||||||||||||||||| |
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| T |
48823975 |
gaacgctttcgttcgactcttattttaatttggctaacgtatacttgggtgttaattatatatggaaagaatataataatatgatttttaataacaaggc |
48823876 |
T |
|
| Q |
97 |
agtatcaattgatgaattagtggacaagaggtgaagctactctctttttggtggctgaaggcgaaacatataatttttgcttttaattatcattggtggc |
196 |
Q |
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| T |
48823875 |
actatcaattgatgaattagtggacaagagatgaagctactctctttttggtggctgaaggcgaaacatataatttttgtttttaattatcattggtggc |
48823776 |
T |
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| Q |
197 |
ttaaccccttggcttgtttgagtattgtcatgtaattttgcttttcagtatttatacattgtagatgaactctct |
271 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
48823775 |
ttaaccccttgacttgtttgagtattgtcatgtaattttgcttttaagtacttatacattgtagatgaactctct |
48823701 |
T |
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Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 17 - 212
Target Start/End: Complemental strand, 21548160 - 21547964
Alignment:
| Q |
17 |
tcgactcttattttaatttggctaacgtacacttgagtgttatggaaaaaacataataatatgatttttaataacaaggcagtatcaattgatgaattag |
116 |
Q |
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|||| ||||||||||||||||||||||| |||||| |||||||||||| ||| |||||| | |||||||| |||||||| |||| |||||| |||||| |
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| T |
21548160 |
tcgattcttattttaatttggctaacgtgcacttgggtgttatggaaagaacgtaataacaaaatttttaacgacaaggcattatcgattgataaattag |
21548061 |
T |
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| Q |
117 |
tggacaagaggtgaagctactctctttttggtggctgaaggcgaaacatataatttttgcttttaattatca---ttggtggcttaaccccttggcttg |
212 |
Q |
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| T |
21548060 |
tggata--aggtgaagctactttctttttggtggctgaaggcgaaacatgtaatttttgcttttcgctatcattgttggcggcttaatcccttggcttg |
21547964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 131 - 241
Target Start/End: Complemental strand, 24433987 - 24433875
Alignment:
| Q |
131 |
agctactctctttttggtggctgaaggcgaaacatataatttttgcttttaattatca---ttggtggcttaaccccttggcttgtttgagtattgtcat |
227 |
Q |
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||||||| |||||||| ||||||||| |||||||||||||||||||||||| |||||| ||||||| |||| | |||||||||||| |||||| ||| |
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| T |
24433987 |
agctactttctttttg-tggctgaagacgaaacatataatttttgcttttagttatcattgttggtggtttaatacattggcttgtttgggtattgccat |
24433889 |
T |
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| Q |
228 |
gtaattttgctttt |
241 |
Q |
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| T |
24433888 |
gtaattttgctttt |
24433875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 104 - 244
Target Start/End: Complemental strand, 6041492 - 6041356
Alignment:
| Q |
104 |
attgatgaattagtggacaagaggtgaagctactctctttttggtggctgaaggcgaaacatataatttttgcttttaattatcattggtggcttaaccc |
203 |
Q |
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| T |
6041492 |
attgatgaattagcagacaag--gtaaagccactttctttttggtggttgaaggggaaacatgtaatttttgcgct--attattgttggtggcttaatcc |
6041397 |
T |
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| Q |
204 |
cttggcttgtttgagtattgtcatgtaattttgcttttcag |
244 |
Q |
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| T |
6041396 |
cttggcttatttgggtattgctatgtaattttgcttttcag |
6041356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 24869632 - 24869851
Alignment:
| Q |
20 |
actcttattttaatttggctaacgtacacttgagtgttatggaaaaaacataataatatgatttttaataacaaggcagtatcaattgatgaattagtgg |
119 |
Q |
| |
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|||||| || |||| |||||||||| || ||| ||| |||||||| ||| ||||| |||||||||||||||||||| | || ||| |||||||||||| |
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| T |
24869632 |
actcttcttgtaatatggctaacgtgcatttgggtgatatggaaagaacgaaataacatgatttttaataacaaggccgcttcgatttatgaattagtgg |
24869731 |
T |
|
| Q |
120 |
acaagaggtgaagctactctctttttggtggctgaaggcgaaacatataatttttgcttttaattatca---ttggtggcttaaccccttggcttgtttg |
216 |
Q |
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||| | || ||||| || ||||||| ||||||||||| |||| || ||||||||||||||| |||||| |||||||||||| ||||||| ||||||| |
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| T |
24869732 |
aca--aagttaagctgctatcttttttgtggctgaaggagaaatatgtaatttttgcttttagttatcattgttggtggcttaatcccttggtttgtttg |
24869829 |
T |
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| Q |
217 |
agtattgtcatgtaattttgct |
238 |
Q |
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|||| |||||||||||||| |
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| T |
24869830 |
gatattagcatgtaattttgct |
24869851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 105 - 267
Target Start/End: Original strand, 39718194 - 39718357
Alignment:
| Q |
105 |
ttgatgaattagtggacaagaggtgaagctactctctttttggtggctgaaggcgaaacatataatttttgcttttaattatca---ttggtggcttaac |
201 |
Q |
| |
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|||||||||||||||||||| |||||| |||| | |||||||||||||||| |||||||| ||| ||||||||||| |||||| |||||||||||| |
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| T |
39718194 |
ttgatgaattagtggacaag--gtgaagttactttttttttggtggctgaagtcgaaacatgtaaattttgcttttagttatcactgttggtggcttaat |
39718291 |
T |
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| Q |
202 |
cccttggcttgtttgagtattgtcatgtaattttgcttttcagtatttatacattgtagatgaact |
267 |
Q |
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| T |
39718292 |
cctttggcatgtttgggtatcaccgtgtaatttttcttttcagtacttgtacatagtagatgaact |
39718357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0174 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0174
Description:
Target: scaffold0174; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 158
Target Start/End: Original strand, 23554 - 23653
Alignment:
| Q |
57 |
tatggaaaaaacataataatatgatttttaataacaaggcagtatcaattgatgaattagtggacaagaggtgaagctactctctttttggtggctgaag |
156 |
Q |
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| T |
23554 |
tatggaaaaaacgcaataacaagatttttaataacaaggtagtgtctatttctggactggtggacaac--gttaagctactctctttttggtggctgaag |
23651 |
T |
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