View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_128 (Length: 280)
Name: NF6875A_low_128
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_128 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 7 - 280
Target Start/End: Complemental strand, 45123582 - 45123309
Alignment:
| Q |
7 |
ctgagatgaagaccgttaaaaatacatttaatcaatacatcatcactaatattcataatattctgtaatagacattcatagaaggatacatttgagaaac |
106 |
Q |
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| T |
45123582 |
ctgagatgaagaccgttaaaaatacatttaatcaatacatcatcactaatattcataatattttgtaatagacattcatagaaggatatatttgagaaac |
45123483 |
T |
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| Q |
107 |
atttttcatagttgaagacaaaattgtgttggaaaagatcaacatagagaaaataaagaaacacaatcacaacataggtggaaacttcaaaaagcggaga |
206 |
Q |
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| T |
45123482 |
atttttcatagttgaagacaaaattgtgttggaaaagatcaacatagagaaaataaagaaacacaatcacaacataggtagaaacttcaaaaagcggaga |
45123383 |
T |
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| Q |
207 |
cgaaactatgatcactgtccaataacaactagaaaataatactatatgcaaacttttacaacacatagactagt |
280 |
Q |
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| T |
45123382 |
cgaaactatgatcattgtccaatgacaactagaaaataatactatatgcaaacttttacaacacatagactagt |
45123309 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 22190646 - 22190691
Alignment:
| Q |
222 |
tgtccaataacaactagaaaataatactatatgcaaacttttacaa |
267 |
Q |
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| T |
22190646 |
tgtccaatgacaactagagaataacactatatgcaaatttttacaa |
22190691 |
T |
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