View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_13 (Length: 440)
Name: NF6875A_low_13
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 157; Significance: 3e-83; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 275 - 435
Target Start/End: Complemental strand, 31069397 - 31069237
Alignment:
| Q |
275 |
ctattatcttcttatttatattaacgaaatgtgttgagatgaatcttgtgatattccttgaccatttttggaagaactgaagcaatttctttcattttgt |
374 |
Q |
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| T |
31069397 |
ctattatcttcttatttatattaacgaaatgtgttgagatgaatcttgtgatattccttgaccatttttggaagaactgaagcaatttctttcattttgt |
31069298 |
T |
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| Q |
375 |
cttcggtgttttctatgaaacttgaatcgatattggtgaaatcatcttgatgggtgattgt |
435 |
Q |
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| T |
31069297 |
cttcggtgttttctatgaaacttgaatcgatattggtgaaatcatcttgatgggtgtttgt |
31069237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 143 - 212
Target Start/End: Complemental strand, 31069529 - 31069460
Alignment:
| Q |
143 |
agagacacaagtgaagaatagggggaatggttttgaagcttaacatcaccttgctgaaggaagaagacat |
212 |
Q |
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| T |
31069529 |
agagacacaagtgaagaatagggggaatggttttgaagcttaacatcaccttgctgaaggaagaagacat |
31069460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 31069661 - 31069596
Alignment:
| Q |
11 |
attcttgagttaaaccgtcatttctcttcccacaaaatctttcaagtagcggaagaacaacttcat |
76 |
Q |
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| T |
31069661 |
attcttgagttctaccgtcatttctcttcccgcaaaatctttcaagtagcagaagaacaacttcat |
31069596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 37614398 - 37614334
Alignment:
| Q |
12 |
ttcttgagttaaaccgtcatttctcttcccacaaaatctttcaagtagcggaagaacaacttcat |
76 |
Q |
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| T |
37614398 |
ttcttgagttcaaccgtcacttctcttcccaccaaatctttgaagtacgagaagaacagcttcat |
37614334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 311 - 429
Target Start/End: Original strand, 11592990 - 11593109
Alignment:
| Q |
311 |
agatgaatcttgtgatattccttgacc-atttttggaagaactgaagcaatttctttcattttgtcttcggtgttttctatgaaacttgaatcgatattg |
409 |
Q |
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| T |
11592990 |
agatgcatcttgtgaaattccttgacccatgtttggaagaacagaagcagcttctttgattctgtctttggtgttttctatgaaaccagaatccatgttg |
11593089 |
T |
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| Q |
410 |
gtgaaatcatcttgatgggt |
429 |
Q |
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| T |
11593090 |
gtgtaatcttgttgatgggt |
11593109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 311 - 429
Target Start/End: Complemental strand, 11645129 - 11645010
Alignment:
| Q |
311 |
agatgaatcttgtgatattccttgacc-atttttggaagaactgaagcaatttctttcattttgtcttcggtgttttctatgaaacttgaatcgatattg |
409 |
Q |
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| T |
11645129 |
agatgcatcttgtgaaattccttgacccatgtttggaagaacagaagcagcttctttgattctgtctttggtgttttctatgaaaccagaatccatgttg |
11645030 |
T |
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| Q |
410 |
gtgaaatcatcttgatgggt |
429 |
Q |
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| T |
11645029 |
gtgtaatcttgttgatgggt |
11645010 |
T |
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