View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_131 (Length: 280)
Name: NF6875A_low_131
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_131 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 31557058 - 31557330
Alignment:
| Q |
1 |
aaaactgtattgactatatagtcaataatattatatcatataatagacaaagcacatgtcaatttacaatgccccactttgtaataataggttacacaat |
100 |
Q |
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| T |
31557058 |
aaaactgtattgactatatagtcaataatattatatcatataatagacaaagcacatgtcaatttacaatgccccactttgtaataataggttacacaat |
31557157 |
T |
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| Q |
101 |
tcctaagggaatgaaggtgattgcatcatttcgtgctgtgcatttgaatcctgaacatttcaaagatgctcgcaccttcaatccatggagatggcaggta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31557158 |
tcctaagggaatgaaggtgattgcatcatttcgtgctgtgcatttgaatcctgaacatttcaaagatgctcgcaccttcaatccatggagatggcaggta |
31557257 |
T |
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| Q |
201 |
catgattagnnnnnnnattattgctgatctaattaatgttatgttgagttacactgcactcttcagttgcttat |
274 |
Q |
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| T |
31557258 |
catgattag-ttttttattattgctgatctaattaatgttatgttgagttacactacactcttcagttgcttat |
31557330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 121 - 200
Target Start/End: Original strand, 35478967 - 35479046
Alignment:
| Q |
121 |
ttgcatcatttcgtgctgtgcatttgaatcctgaacatttcaaagatgctcgcaccttcaatccatggagatggcaggta |
200 |
Q |
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|||||||||||||||| || ||| | || || || |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
35478967 |
ttgcatcatttcgtgccgtacatctaaaccccgatcatttcaaagatgcgcgcaccttcaatccatggagatggcaggta |
35479046 |
T |
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