View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_136 (Length: 277)
Name: NF6875A_low_136
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_136 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 13 - 265
Target Start/End: Complemental strand, 1714695 - 1714443
Alignment:
| Q |
13 |
tgatactcacaatattacattttcttttgttacaactcacaatattacatttaaaggattcaaataataaagattaatacacacacatgtgtatattgtc |
112 |
Q |
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| T |
1714695 |
tgatactcgcaatattacattttcttttgttacaactcacaatattacatttaaaggattcaaataataaagattaatacacacacatgtgtatattgtc |
1714596 |
T |
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| Q |
113 |
ctaaccatatgaattgataacatgtaacatggttgcaggattaaaggtacagttgatgctggttctggttgggatagatggttcggaggagcacacaact |
212 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1714595 |
ctaaccatatgagttgataacatgtaacatggttgcaggattaaaggtacagttgatgctggttctggttgggatagatggttcggaggagcacacaact |
1714496 |
T |
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| Q |
213 |
ctcgaaatcataagcgctggatttagaaaatgttttatagttgtatacatatt |
265 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
1714495 |
ctcgaaatcataagcgctggatttagaaaatgttttttagttgtatacatatt |
1714443 |
T |
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