View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_145 (Length: 271)
Name: NF6875A_low_145
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_145 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 21 - 259
Target Start/End: Original strand, 32124760 - 32124998
Alignment:
| Q |
21 |
caataaatactaaaaattcaatataagtgagggaaattatcgagggtctctctataatatgcacacttttaaaaaagggttaaacctggaattccaattt |
120 |
Q |
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| T |
32124760 |
caataaatgctaaaaattcaatataagtgagggaaattatcgagggtctctctataatatgcacacttttaaaaaaggattaaacctggaattccaattt |
32124859 |
T |
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| Q |
121 |
tacctgttgtagtcaattttacttgtttttaacattcatctttttattttacgtggtgaagttctcttttcctcttgcagctaaacacattgtcacacgc |
220 |
Q |
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| T |
32124860 |
tacctgttgtagtcaattttacttgtttttaacattcatctttttattttacgtggtgaagttctcttttcctcttgcagctaaacacattgtcacacgc |
32124959 |
T |
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| Q |
221 |
atttattcccttattcccgctctaaatgaagaacatatt |
259 |
Q |
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| T |
32124960 |
atttattcccttattcccgctctaaatgaagaacatatt |
32124998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 32150109 - 32150184
Alignment:
| Q |
22 |
aataaatactaaaaattcaatataagtgagggaaattatcgagggtctctctataatatgcacacttttaaaaaaggg |
99 |
Q |
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||||||| |||||||||| ||||||||| ||||||||| |||||||||| ||||| ||||||||||| ||||||| |
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| T |
32150109 |
aataaatgttaaaaattcactataagtgaaggaaattatgtagggtctctc--taataggcacacttttataaaaggg |
32150184 |
T |
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