View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_148 (Length: 270)
Name: NF6875A_low_148
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_148 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 37552453 - 37552214
Alignment:
| Q |
15 |
tggacatcagtgtaaaacatttttgcactttcagtgcttacaattaaattaaattactcattgaataccacacgatgtctctttgccttaatgaaatgtt |
114 |
Q |
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| T |
37552453 |
tggacatcagtgtaaaacatttttgcactttcagtgcttacaattaaattaaattactcattgaataccacacgatgtctctttgccttaatgaaatgtt |
37552354 |
T |
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| Q |
115 |
tactgtattatactaatgaagacaagccattttctgaatcacatatcttcaatttcttgcttaggcttttgcttttgttccactcatgtacatgtgcatt |
214 |
Q |
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| T |
37552353 |
tactgtattatactaatgaagacaagccattttctgaatcacatatcttcaatttcttgcttaggcttttgcttttgttccactcatgtacatgtgcatt |
37552254 |
T |
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| Q |
215 |
tgcacatacttctccttgttcaaaattggaaggctgatgt |
254 |
Q |
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| T |
37552253 |
tgcacatacttctccttgttcaaaattggaaggctgatgt |
37552214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 150 - 254
Target Start/End: Complemental strand, 39363433 - 39363329
Alignment:
| Q |
150 |
gaatcacatatcttcaatttcttgcttaggcttttgcttttgttccactcatgtacatgtgcatttgcacatacttctccttgttcaaaattggaaggct |
249 |
Q |
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||||||| || ||||||||||||| |||| |||||||||||||||||||||||||||||||| || ||||||| ||| ||||||||||| |||| | | |
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| T |
39363433 |
gaatcacttaccttcaatttcttgtacaggcatttgcttttgttccactcatgtacatgtgcatctgtacatactactctttgttcaaaatcggaatgtt |
39363334 |
T |
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| Q |
250 |
gatgt |
254 |
Q |
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| T |
39363333 |
gatgt |
39363329 |
T |
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