View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6875A_low_149 (Length: 270)

Name: NF6875A_low_149
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6875A_low_149
NF6875A_low_149
[»] scaffold0049 (1 HSPs)
scaffold0049 (9-264)||(58137-58383)
[»] chr1 (12 HSPs)
chr1 (184-254)||(49557087-49557157)
chr1 (184-255)||(49517016-49517087)
chr1 (194-255)||(30371104-30371165)
chr1 (200-255)||(27738233-27738288)
chr1 (195-258)||(34179922-34179985)
chr1 (201-255)||(7218127-7218181)
chr1 (184-258)||(38578473-38578547)
chr1 (186-247)||(15360842-15360903)
chr1 (202-255)||(25479545-25479598)
chr1 (211-255)||(25006087-25006131)
chr1 (195-255)||(28467360-28467420)
chr1 (201-253)||(28938066-28938117)
[»] scaffold0024 (1 HSPs)
scaffold0024 (184-258)||(27522-27596)
[»] chr7 (3 HSPs)
chr7 (189-255)||(1417215-1417281)
chr7 (184-252)||(45813236-45813304)
chr7 (200-258)||(30456500-30456558)
[»] chr4 (5 HSPs)
chr4 (184-258)||(49219085-49219159)
chr4 (203-255)||(32920453-32920505)
chr4 (189-260)||(24929444-24929515)
chr4 (186-255)||(8130122-8130191)
chr4 (200-252)||(18630642-18630694)
[»] chr6 (9 HSPs)
chr6 (184-255)||(4006660-4006731)
chr6 (184-223)||(28531626-28531665)
chr6 (184-255)||(29274282-29274353)
chr6 (204-254)||(5550098-5550148)
chr6 (184-258)||(9668035-9668109)
chr6 (184-221)||(7785829-7785866)
chr6 (195-255)||(2727909-2727969)
chr6 (181-221)||(5328917-5328957)
chr6 (195-255)||(14492259-14492319)
[»] chr3 (12 HSPs)
chr3 (184-255)||(24235736-24235807)
chr3 (184-253)||(48364934-48365003)
chr3 (184-253)||(48397592-48397661)
chr3 (184-255)||(10101529-10101600)
chr3 (184-255)||(10212454-10212525)
chr3 (184-255)||(38462227-38462298)
chr3 (184-250)||(20192664-20192730)
chr3 (188-254)||(22214735-22214801)
chr3 (184-252)||(30956682-30956750)
chr3 (184-252)||(30972494-30972562)
chr3 (184-256)||(48323767-48323839)
chr3 (181-221)||(54775071-54775111)
[»] chr2 (3 HSPs)
chr2 (200-255)||(11513860-11513915)
chr2 (184-258)||(43199360-43199434)
chr2 (181-221)||(43199186-43199226)
[»] chr8 (4 HSPs)
chr8 (184-258)||(38561672-38561746)
chr8 (203-255)||(6509356-6509408)
chr8 (200-255)||(34770854-34770909)
chr8 (191-251)||(34551073-34551133)
[»] chr5 (5 HSPs)
chr5 (185-256)||(37690689-37690760)
chr5 (185-255)||(37526252-37526322)
chr5 (185-255)||(37588413-37588483)
chr5 (188-255)||(39823174-39823241)
chr5 (189-249)||(42181151-42181211)


Alignment Details
Target: scaffold0049 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 9 - 264
Target Start/End: Complemental strand, 58383 - 58137
Alignment:
Q  9 gagatgaaagccaaatcccagaattagtaagcagatgcagcttaggcttgaagcaaaagctaaggcagctttgtgactttttggtcgattagaggattgc 108  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  58383 gagaagaaagccaaatcccagaattagtaagcagatgcagcttaggcttgaagcaaaagctaaggcagctttgtgactttttggtcgattagaggattgt 58284  T
Q  109 aaatcttgaaaagcatttgagaaaactgtgttaggctcgtttggaaatacgacttaattatgtgtttatagagtttaagttatttatataccaaaagata 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||         ||||||||||||||||| |||||||||    
T  58283 aaatcttgaaaagcatttgagaaaactgtgttaggctcgtttggaaatacaacttaattatgtg---------tttaagttatttatataacaaaagata 58193  T
Q  209 acataaagtcaaatagtattaatatacgctataagttgttttcataaactctctcg 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  58192 acataaagtcaaatagtattaatatacgctataagttgttttcataaactctctcg 58137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 254
Target Start/End: Original strand, 49557087 - 49557157
Alignment:
Q  184 taagttatttatataccaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcata 254  Q
    |||||||||| |||| |||||||||| ||||||| |||||||||| || || |||||||||||||||||||    
T  49557087 taagttatttctataacaaaagataaaataaagttaaatagtattcatttaagctataagttgttttcata 49557157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 255
Target Start/End: Original strand, 49517016 - 49517087
Alignment:
Q  184 taagttatttatataccaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    |||||||||| |||| |||||||||| |||||||||||| || || || || |||||||| |||||||||||    
T  49517016 taagttatttctataacaaaagataaaataaagtcaaattgttttcatttaagctataagctgttttcataa 49517087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 255
Target Start/End: Original strand, 30371104 - 30371165
Alignment:
Q  194 atataccaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    ||||| |||||||||| ||||| |||||| || || ||||| ||||||||||||||||||||    
T  30371104 atataacaaaagataaaataaactcaaattgttttcatataagctataagttgttttcataa 30371165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 255
Target Start/End: Complemental strand, 27738288 - 27738233
Alignment:
Q  200 caaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    |||||||||| |||||||||||| || || ||||| ||||||| ||||||||||||    
T  27738288 caaaagataaaataaagtcaaattgttttcatataagctataatttgttttcataa 27738233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 258
Target Start/End: Complemental strand, 34179985 - 34179922
Alignment:
Q  195 tataccaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 258  Q
    |||| |||||||||| |||||||||||| || ||||| || |||||||  ||||||||||||||    
T  34179985 tataacaaaagataaaataaagtcaaattgttttaatctaagctataaactgttttcataaact 34179922  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 255
Target Start/End: Complemental strand, 7218181 - 7218127
Alignment:
Q  201 aaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    ||||| ||| |||||||||||| || || ||||| ||||||||||||||||||||    
T  7218181 aaaaggtaaaataaagtcaaattgttttcatataagctataagttgttttcataa 7218127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 38578473 - 38578547
Alignment:
Q  184 taagttatttatataccaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 258  Q
    |||| ||||| |||| |||||||||||||||||| ||||  | ||  |||| |||||||||||||| ||||||||    
T  38578473 taagctatttctataacaaaagataacataaagttaaattatttttgtataagctataagttgtttacataaact 38578547  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 15360842 - 15360903
Alignment:
Q  186 agttatttatataccaaaagataacataaagtcaaatagtattaatatacgctataagttgt 247  Q
    |||||||| |||| |||||||||| |||||||||||  || || ||||| ||||||||||||    
T  15360842 agttatttctataacaaaagataaaataaagtcaaactgttttcatataagctataagttgt 15360903  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 255
Target Start/End: Original strand, 25479545 - 25479598
Alignment:
Q  202 aaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    |||||||| |||| ||||||| || || ||||| ||||||||||||||||||||    
T  25479545 aaagataaaataacgtcaaattgtcttcatataggctataagttgttttcataa 25479598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 255
Target Start/End: Complemental strand, 25006131 - 25006087
Alignment:
Q  211 ataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    |||||||||||| || || ||||| ||||||||||||||||||||    
T  25006131 ataaagtcaaattgttttcatataagctataagttgttttcataa 25006087  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 28467420 - 28467360
Alignment:
Q  195 tataccaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    |||| |||||||||| ||||||||||||  | || ||||| |||| |||||||||||||||    
T  28467420 tataacaaaagataaaataaagtcaaattattttcatataagctacaagttgttttcataa 28467360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 28938066 - 28938117
Alignment:
Q  201 aaaagataacataaagtcaaatagtattaatatacgctataagttgttttcat 253  Q
    |||||||||||||| |||||||  | || ||||||||||||||||||||||||    
T  28938066 aaaagataacataa-gtcaaatcattttcatatacgctataagttgttttcat 28938117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 27522 - 27596
Alignment:
Q  184 taagttatttatataccaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 258  Q
    |||||||||| |||| || ||||||| |||||||||||| || || |||||  ||||||||||||||||||||||    
T  27522 taagttatttctataacagaagataaaataaagtcaaattgttttcatataaactataagttgttttcataaact 27596  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 255
Target Start/End: Original strand, 1417215 - 1417281
Alignment:
Q  189 tatttatataccaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    |||||||||| |||||||||| |||||||||||| || || ||||| || |||||||||||||||||    
T  1417215 tatttatataacaaaagataaaataaagtcaaattgttttcatataagcaataagttgttttcataa 1417281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 252
Target Start/End: Complemental strand, 45813304 - 45813236
Alignment:
Q  184 taagttatttatataccaaaagataacataaagtcaaatagtattaatatacgctataagttgttttca 252  Q
    |||| ||||| ||||||||||||||| |||||||||| | || || |||||  ||||||||||||||||    
T  45813304 taagctatttctataccaaaagataaaataaagtcaacttgttttcatataatctataagttgttttca 45813236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 258
Target Start/End: Complemental strand, 30456558 - 30456500
Alignment:
Q  200 caaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 258  Q
    |||||||||| |||||||||||| || || ||||| | ||||||| |||||||||||||    
T  30456558 caaaagataaaataaagtcaaattgttttcatataagttataagtggttttcataaact 30456500  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 49219085 - 49219159
Alignment:
Q  184 taagttatttatataccaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 258  Q
    |||||||||| |||| ||||| |||| ||||||||||||  | || ||||| |||||||||||||||||||||||    
T  49219085 taagttatttctataacaaaatataaaataaagtcaaattattttcatataagctataagttgttttcataaact 49219159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 32920505 - 32920453
Alignment:
Q  203 aagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    ||||||| |||||||||||| || |||||| | ||||||||||||||||||||    
T  32920505 aagataaaataaagtcaaatcgttttaatagaagctataagttgttttcataa 32920453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 260
Target Start/End: Original strand, 24929444 - 24929515
Alignment:
Q  189 tatttatataccaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaactct 260  Q
    ||||| |||| |||||||||| |||||||| ||  || || ||| | |||||||||||||||||||||||||    
T  24929444 tatttctataacaaaagataaaataaagtctaactgttttcataaaagctataagttgttttcataaactct 24929515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 8130122 - 8130191
Alignment:
Q  186 agttatttatataccaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    |||| ||| |||| |||||||||||||||||||||||  | || ||||| |||||||  |||||||||||    
T  8130122 agttctttctataacaaaagataacataaagtcaaattattttcatataagctataaactgttttcataa 8130191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 18630642 - 18630694
Alignment:
Q  200 caaaagataacataaagtcaaatagtattaatatacgctataagttgttttca 252  Q
    |||||||||| |||||||||| | || || ||||| |||||||||||||||||    
T  18630642 caaaagataaaataaagtcaattggttttcatataagctataagttgttttca 18630694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 255
Target Start/End: Original strand, 4006660 - 4006731
Alignment:
Q  184 taagttatttatataccaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    |||| ||||| |||| |||| ||||| |||||||||||| || || ||||| ||||||||||||||||||||    
T  4006660 taagatatttctataacaaatgataaaataaagtcaaattgtttttatataagctataagttgttttcataa 4006731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 223
Target Start/End: Complemental strand, 28531665 - 28531626
Alignment:
Q  184 taagttatttatataccaaaagataacataaagtcaaata 223  Q
    ||||||||||||||| |||||||||| |||||||||||||    
T  28531665 taagttatttatataacaaaagataaaataaagtcaaata 28531626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 255
Target Start/End: Complemental strand, 29274353 - 29274282
Alignment:
Q  184 taagttatttatataccaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    |||| ||||| |||| |||||||||| |||||||||||| || || ||||| |||||||  |||||||||||    
T  29274353 taagctatttctatagcaaaagataaaataaagtcaaattgttttcatataagctataaactgttttcataa 29274282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 5550098 - 5550148
Alignment:
Q  204 agataacataaagtcaaatagtattaatatacgctataagttgttttcata 254  Q
    ||||||||||||||||||| || || ||||| |||||||| ||||||||||    
T  5550098 agataacataaagtcaaattgttttcatataagctataagctgttttcata 5550148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 258
Target Start/End: Complemental strand, 9668109 - 9668035
Alignment:
Q  184 taagttatttatataccaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 258  Q
    |||| ||||| |||| |||||||||||||| |||| ||| || || ||||| |||| || |||||||||||||||    
T  9668109 taagctatttgtataacaaaagataacatagagtcgaattgttttcatataagctacaatttgttttcataaact 9668035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 7785866 - 7785829
Alignment:
Q  184 taagttatttatataccaaaagataacataaagtcaaa 221  Q
    ||||||| |||||||||||||||||| |||||||||||    
T  7785866 taagttacttatataccaaaagataaaataaagtcaaa 7785829  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 2727969 - 2727909
Alignment:
Q  195 tataccaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    |||| ||||||||||   ||| |||||| ||||| ||||| ||||||||||||||||||||    
T  2727969 tataacaaaagataaacaaaaatcaaattgtattgatataagctataagttgttttcataa 2727909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 5328917 - 5328957
Alignment:
Q  181 gtttaagttatttatataccaaaagataacataaagtcaaa 221  Q
    ||||||||||||| |||| |||||||||| |||||||||||    
T  5328917 gtttaagttatttctataacaaaagataaaataaagtcaaa 5328957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 14492259 - 14492319
Alignment:
Q  195 tataccaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    ||||||||||||||| || ||||||||| || || ||| | |||||||| |||||||||||    
T  14492259 tataccaaaagataaaatgaagtcaaattgttttgatacaagctataagctgttttcataa 14492319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 255
Target Start/End: Complemental strand, 24235807 - 24235736
Alignment:
Q  184 taagttatttatataccaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    |||||||||| |||| |||||||||| |||||||||||   | | |||||| ||||||||||||||||||||    
T  24235807 taagttatttctataacaaaagataatataaagtcaaactatttgaatataagctataagttgttttcataa 24235736  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 253
Target Start/End: Complemental strand, 48365003 - 48364934
Alignment:
Q  184 taagttatttatataccaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcat 253  Q
    ||||||||||  ||| |||||||||| |||||||||||| || || || ||||| |||||||||||||||    
T  48365003 taagttatttcgataacaaaagataaaataaagtcaaattgttttcatttacgccataagttgttttcat 48364934  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 253
Target Start/End: Original strand, 48397592 - 48397661
Alignment:
Q  184 taagttatttatataccaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcat 253  Q
    |||||||||| ||||  ||||||||| |||||||||||| || || || || ||||||||||||||||||    
T  48397592 taagttatttttataataaaagataaaataaagtcaaattgtttttatttaagctataagttgttttcat 48397661  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 255
Target Start/End: Complemental strand, 10101600 - 10101529
Alignment:
Q  184 taagttatttatataccaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    |||||||||| |||| |||||||||| ||||||| |||| || || ||||| | || |||||||||||||||    
T  10101600 taagttatttctataacaaaagataaaataaagttaaattgttttcatataagataaaagttgttttcataa 10101529  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 255
Target Start/End: Complemental strand, 10212525 - 10212454
Alignment:
Q  184 taagttatttatataccaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    |||||||||| |||| |||||||||| ||||||| |||| || || ||||| | || |||||||||||||||    
T  10212525 taagttatttctataacaaaagataaaataaagttaaattgttttcatataagataaaagttgttttcataa 10212454  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 255
Target Start/End: Original strand, 38462227 - 38462298
Alignment:
Q  184 taagttatttatataccaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    |||| ||||| ||||||||||||||| |||||||||||  || || ||||| |||||||  |||||||||||    
T  38462227 taagctatttctataccaaaagataaaataaagtcaaactgttttcatatatgctataaactgttttcataa 38462298  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 250
Target Start/End: Complemental strand, 20192730 - 20192664
Alignment:
Q  184 taagttatttatataccaaaagataacataaagtcaaatagtattaatatacgctataagttgtttt 250  Q
    |||| |||||||||| |||||||||| ||||||||||| ||| || |||||  ||||||| ||||||    
T  20192730 taagctatttatataacaaaagataaaataaagtcaaacagttttcatataatctataagctgtttt 20192664  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 254
Target Start/End: Complemental strand, 22214801 - 22214735
Alignment:
Q  188 ttatttatataccaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcata 254  Q
    |||||| |||| |||| ||||| ||||||| |||| ||||| |||||  ||||||||||||||||||    
T  22214801 ttatttctataacaaaggataaaataaagtgaaattgtattcatataacctataagttgttttcata 22214735  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 252
Target Start/End: Complemental strand, 30956750 - 30956682
Alignment:
Q  184 taagttatttatataccaaaagataacataaagtcaaatagtattaatatacgctataagttgttttca 252  Q
    |||| ||||| |||| |||||||||| ||||||| |||| || ||  |||| |||||||||||||||||    
T  30956750 taagctatttctatagcaaaagataaaataaagttaaattgtttttgtataggctataagttgttttca 30956682  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 252
Target Start/End: Complemental strand, 30972562 - 30972494
Alignment:
Q  184 taagttatttatataccaaaagataacataaagtcaaatagtattaatatacgctataagttgttttca 252  Q
    |||| ||||| |||| |||||||||| ||||||| |||| || ||  |||| |||||||||||||||||    
T  30972562 taagctatttctatagcaaaagataaaataaagttaaattgtttttgtataggctataagttgttttca 30972494  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 256
Target Start/End: Original strand, 48323767 - 48323839
Alignment:
Q  184 taagttatttatataccaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaa 256  Q
    |||||||||| ||||  ||||||||| |||||||||||| || ||  | || ||||||| |||||||||||||    
T  48323767 taagttatttctataataaaagataatataaagtcaaattgtttttctgtaagctataaattgttttcataaa 48323839  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 54775071 - 54775111
Alignment:
Q  181 gtttaagttatttatataccaaaagataacataaagtcaaa 221  Q
    ||||||||||||| |||| |||||||||| |||||||||||    
T  54775071 gtttaagttatttctataacaaaagataaaataaagtcaaa 54775111  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 255
Target Start/End: Original strand, 11513860 - 11513915
Alignment:
Q  200 caaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    |||||||||| |||||||||||| || || ||||| ||||||||||||||||||||    
T  11513860 caaaagataaaataaagtcaaattgttttcatataagctataagttgttttcataa 11513915  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 43199360 - 43199434
Alignment:
Q  184 taagttatttatataccaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 258  Q
    |||||||||| || | |||||||||| ||||||| ||||  | ||  |||| |||||||||||||||||||||||    
T  43199360 taagttatttctacaacaaaagataaaataaagttaaattatcttcgtataagctataagttgttttcataaact 43199434  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 43199186 - 43199226
Alignment:
Q  181 gtttaagttatttatataccaaaagataacataaagtcaaa 221  Q
    |||||| ||||||||||| |||||||||| |||||||||||    
T  43199186 gtttaaattatttatataacaaaagataaaataaagtcaaa 43199226  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 38561672 - 38561746
Alignment:
Q  184 taagttatttatataccaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 258  Q
    ||||||||||||||| |||||||||| |||||||||||   | || || ||  ||||||||||||||||||||||    
T  38561672 taagttatttatataacaaaagataaaataaagtcaaactatttttatctatactataagttgttttcataaact 38561746  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 6509408 - 6509356
Alignment:
Q  203 aagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    ||||||| |||||||||||| ||||| ||||| |||||||| |||||||||||    
T  6509408 aagataaaataaagtcaaattgtatttatataagctataagctgttttcataa 6509356  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 255
Target Start/End: Original strand, 34770854 - 34770909
Alignment:
Q  200 caaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    |||||||||| |||||||||||| || || || || ||||||||||||||||||||    
T  34770854 caaaagataaaataaagtcaaattgttttcatttaagctataagttgttttcataa 34770909  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 251
Target Start/End: Original strand, 34551073 - 34551133
Alignment:
Q  191 tttatataccaaaagataacataaagtcaaatagtattaatatacgctataagttgttttc 251  Q
    |||||||| ||||||||||||| ||||||||| || || || || | ||||||||||||||    
T  34551073 tttatataacaaaagataacatcaagtcaaattgttttcatttaagttataagttgttttc 34551133  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 256
Target Start/End: Complemental strand, 37690760 - 37690689
Alignment:
Q  185 aagttatttatataccaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaa 256  Q
    ||||||||| ||||  ||||||||| || || ||||| ||| || ||||| |||||||||||||||||||||    
T  37690760 aagttatttctataataaaagataaaatcaaatcaaaaagttttcatataagctataagttgttttcataaa 37690689  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 255
Target Start/End: Complemental strand, 37526322 - 37526252
Alignment:
Q  185 aagttatttatataccaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    ||||||||| ||||  ||||||||| || || ||||| ||| || ||||| ||||||||||||||||||||    
T  37526322 aagttatttctataataaaagataaaatcaaatcaaaaagttttcatataagctataagttgttttcataa 37526252  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 255
Target Start/End: Complemental strand, 37588483 - 37588413
Alignment:
Q  185 aagttatttatataccaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    ||||||||| ||||  ||||||||| || || ||||| ||| || ||||| ||||||||||||||||||||    
T  37588483 aagttatttctataataaaagataaaatcaaatcaaaaagttttcatataagctataagttgttttcataa 37588413  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 255
Target Start/End: Complemental strand, 39823241 - 39823174
Alignment:
Q  188 ttatttatataccaaaagataacataaagtcaaa-tagtattaatatacgctataagttgttttcataa 255  Q
    ||||||||||| |||||||||| ||||||||||| || | || ||||| |||| |||||||||||||||    
T  39823241 ttatttatataacaaaagataaaataaagtcaaactact-ttcatataagctacaagttgttttcataa 39823174  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 42181211 - 42181151
Alignment:
Q  189 tatttatataccaaaagataacataaagtcaaatagtattaatatacgctataagttgttt 249  Q
    ||||| |||| |||||||||| | |||||||||| || || ||||| ||||||||||||||    
T  42181211 tatttttataacaaaagataaaacaaagtcaaatggttttcatataagctataagttgttt 42181151  T

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