View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6875A_low_154 (Length: 266)

Name: NF6875A_low_154
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6875A_low_154
NF6875A_low_154
[»] chr2 (17 HSPs)
chr2 (5-258)||(9328917-9329170)
chr2 (11-258)||(9321297-9321541)
chr2 (6-249)||(9292261-9292498)
chr2 (5-156)||(9316448-9316599)
chr2 (83-155)||(9357604-9357676)
chr2 (11-141)||(10353556-10353686)
chr2 (78-140)||(10348227-10348289)
chr2 (78-141)||(10372305-10372368)
chr2 (82-147)||(10336273-10336338)
chr2 (83-147)||(9283827-9283891)
chr2 (88-249)||(9274845-9275000)
chr2 (38-147)||(7115231-7115340)
chr2 (83-147)||(9060772-9060836)
chr2 (182-243)||(9283923-9283984)
chr2 (16-53)||(9357703-9357740)
chr2 (180-249)||(10348121-10348190)
chr2 (4-68)||(9275029-9275093)
[»] chr4 (1 HSPs)
chr4 (4-141)||(26575308-26575445)
[»] chr3 (2 HSPs)
chr3 (81-147)||(37462927-37462993)
chr3 (180-224)||(37462853-37462897)
[»] scaffold0667 (1 HSPs)
scaffold0667 (78-147)||(4912-4981)
[»] chr8 (1 HSPs)
chr8 (85-147)||(41966362-41966424)
[»] chr1 (2 HSPs)
chr1 (85-146)||(29467429-29467489)
chr1 (85-141)||(29423703-29423759)


Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 5 - 258
Target Start/End: Complemental strand, 9329170 - 9328917
Alignment:
Q  5 gtaaatatcgtattatccctttcctacctcttgctatccctaacattcttgaatctgacaacatccgtcgcttctccttatgcgttcacggtttcggttt 104  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9329170 gtaaacatcgtattatccctttcctacctcttgctatccctaacattcttgaatctgacaacatccatcgcttctccttatgcgttcacggtttcggttt 9329071  T
Q  105 tgatcctttatccggtgattacaaactcctcagaatcgcttggatagccgatccaaatgaaagatcctcttttgttccacatgtcagactcttcaactct 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9329070 tgatcctttatccggtgattacaaactcctcagaatcgcttggatagccgatccaaatgaaagatcctcttttgttccacatgtcagactcttcaactct 9328971  T
Q  205 aaaacaaactcttggaaaattattcctgctatgccctacgctcttgtctatgct 258  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9328970 aaaacaaactcttggaaaataattcctgctatgccctacgctcttgtctatgct 9328917  T

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Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 11 - 258
Target Start/End: Complemental strand, 9321541 - 9321297
Alignment:
Q  11 atcgtattatccctttcctacctcttgctatccctaacattcttgaatctgacaacatccgtcgcttctccttatgcgttcacggtttcggttttgatcc 110  Q
    ||||||| |||||||||||||||||| |||||||| ||||| | ||||| |||||||||  ||||| || |||||||||||| |||||||||||||||||    
T  9321541 atcgtatgatccctttcctacctcttcctatccctgacattatggaatccgacaacatcaatcgctgctgcttatgcgttcatggtttcggttttgatcc 9321442  T
Q  111 tttatccggtgattacaaactcctcagaatcgcttggatagccgatccaaatgaaagatcctcttttgttccacatgtcagactcttcaactctaaaaca 210  Q
    |||| |||| ||||||||||||||||||||| ||||| |||||  ||||    | |  || | || || | |||||||||||||||||| ||||| ||||    
T  9321441 tttaaccggcgattacaaactcctcagaatctcttggttagcctctcca---cacaactctttttatgattcacatgtcagactcttcagctctataaca 9321345  T
Q  211 aactcttggaaaattattcctgctatgccctacgctcttgtctatgct 258  Q
    ||||| |||||||| |||||   |||||| ||| ||||| ||||||||    
T  9321344 aactcgtggaaaataattcccagtatgccgtactctcttatctatgct 9321297  T

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Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 6 - 249
Target Start/End: Complemental strand, 9292498 - 9292261
Alignment:
Q  6 taaatatcgtattatccctttcctacctcttgctatccctaacattcttgaatctgacaacatccgtcgcttctccttatgcgttcacggtttcggtttt 105  Q
    |||| |||| ||||||||||| || ||||||||||||||||||||||| || ||||| |||||   ||||  |    ||||||||||||| ||||||| |    
T  9292498 taaacatcggattatcccttttctccctcttgctatccctaacattctcgagtctgaaaacattgatcgcgccggtgtatgcgttcacggcttcggttat 9292399  T
Q  106 gatcctttatccggtgattacaaactcctcagaatcgcttggatagccgatccaaatgaaagatcctcttttgttccacatgtcagactcttcaactcta 205  Q
    ||||| ||| |||| ||||||||||||||||||||| ||||||||||||| | | ||      | |||||||| |||||| || |||||||||| ||| |    
T  9292398 gatccattaaccggcgattacaaactcctcagaatctcttggatagccgacctacat------tactcttttgatccacaggtgagactcttcagctcca 9292305  T
Q  206 aaacaaactcttggaaaattattcctgctatgccctacgctctt 249  Q
    |||| ||||| |||||||| ||||||  |||||| |||||||||    
T  9292304 aaactaactcgtggaaaatcattcctagtatgccgtacgctctt 9292261  T

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Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 156
Target Start/End: Complemental strand, 9316599 - 9316448
Alignment:
Q  5 gtaaatatcgtattatccctttcctacctcttgctatccctaacattcttgaatctgacaacatccgtcgcttctccttatgcgttcacggtttcggttt 104  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||   |  ||||  |    ||||||||||||| ||||||||    
T  9316599 gtaaacatcgtattatccctttccttcctcttgctatccctaacattcttgaatctgacaaacccaatcgcggcggtatatgcgttcacggcttcggttt 9316500  T
Q  105 tgatcctttatccggtgattacaaactcctcagaatcgcttggatagccgat 156  Q
    |||||| | | | |||||||||||||||||||||||  ||||||| ||||||    
T  9316499 tgatccatcaacaggtgattacaaactcctcagaatttcttggatggccgat 9316448  T

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Target: chr2; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 83 - 155
Target Start/End: Complemental strand, 9357676 - 9357604
Alignment:
Q  83 tatgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcagaatcgcttggatagccga 155  Q
    ||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||    
T  9357676 tatgcgttcacggcttcggttttgatcctttaaccggcgattacaaactcctcagaatctcttggatagccga 9357604  T

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Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 141
Target Start/End: Complemental strand, 10353686 - 10353556
Alignment:
Q  11 atcgtattatccctttcctacctcttgctatccctaacattcttgaatctgacaac---atccgtcgcttctccttatgcgttcacggtttcggttttga 107  Q
    |||| ||||||||||| || |||||| ||||||||||||||||  |||||||||||   | |||| ||| ||   |||||||||| || |||||||||||    
T  10353686 atcggattatcccttttctccctcttcctatccctaacattctccaatctgacaaccctaaccgtggctgct---tatgcgttcatggcttcggttttga 10353590  T
Q  108 tcctttatccggtgattacaaactcctcagaatc 141  Q
    | || ||||||| |||||||||||||||||||||    
T  10353589 ttctgtatccggcgattacaaactcctcagaatc 10353556  T

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Target: chr2; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 78 - 140
Target Start/End: Complemental strand, 10348289 - 10348227
Alignment:
Q  78 ctccttatgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcagaat 140  Q
    |||||||||||||||||| |||||||||||||   ||||||||||||||||||||||||||||    
T  10348289 ctccttatgcgttcacggcttcggttttgatcaaatatccggtgattacaaactcctcagaat 10348227  T

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Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 78 - 141
Target Start/End: Complemental strand, 10372368 - 10372305
Alignment:
Q  78 ctccttatgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcagaatc 141  Q
    ||||||||||||||| || |||||||||||| |||||||||| ||| |||||||||||||||||    
T  10372368 ctccttatgcgttcatggcttcggttttgattctttatccggcgatcacaaactcctcagaatc 10372305  T

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Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 147
Target Start/End: Complemental strand, 10336338 - 10336273
Alignment:
Q  82 ttatgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcagaatcgcttgg 147  Q
    |||||||||||||| |||||||||||| | |||||||  ||||||||||||||||||||| |||||    
T  10336338 ttatgcgttcacggattcggttttgattcattatccgccgattacaaactcctcagaatctcttgg 10336273  T

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Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 147
Target Start/End: Original strand, 9283827 - 9283891
Alignment:
Q  83 tatgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcagaatcgcttgg 147  Q
    ||||| ||||||| |||||||||||||||||| |||| ||||||||||||||| ||||| |||||    
T  9283827 tatgcattcacggcttcggttttgatcctttaaccggcgattacaaactcctccgaatctcttgg 9283891  T

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Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 249
Target Start/End: Complemental strand, 9275000 - 9274845
Alignment:
Q  88 gttcacggtttcggttttgatcctttatccggtgattacaaactcctcagaatcgcttggatagccgatccaaatgaaagatcctcttttgttccacatg 187  Q
    ||||||||||| |||||||||||||||||||| ||||| ||||| ||||||||| | ||| |||| |||  | ||      | ||||||||   ||||||    
T  9275000 gttcacggttttggttttgatcctttatccggcgattataaacttctcagaatctcatggttagctgatatacat------tactcttttgaatcacatg 9274907  T
Q  188 tcagactcttcaactctaaaacaaactcttggaaaattattcctgctatgccctacgctctt 249  Q
    | |||||||||| ||  ||||||||||| |||||||| |||||   |||||| |||||||||    
T  9274906 tgagactcttcagcttgaaaacaaactcgtggaaaataattcccagtatgccgtacgctctt 9274845  T

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Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 147
Target Start/End: Original strand, 7115231 - 7115340
Alignment:
Q  38 ctatccctaacattcttgaatctgacaacatccgtcgcttctccttatgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcag 137  Q
    |||||||||||||| || ||||||||| ||||  | ||||     ||||| ||||||| |||||||||||||||||| | | |||||||||||| |||||    
T  7115231 ctatccctaacattattcaatctgacatcatcaatggcttaggtctatgctttcacggcttcggttttgatcctttaacagatgattacaaacttctcag 7115330  T
Q  138 aatcgcttgg 147  Q
    |||| |||||    
T  7115331 aatctcttgg 7115340  T

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Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 147
Target Start/End: Original strand, 9060772 - 9060836
Alignment:
Q  83 tatgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcagaatcgcttgg 147  Q
    ||||||||||||| |||||||||||||| ||  |||  ||||||||||||||||||||| |||||    
T  9060772 tatgcgttcacggcttcggttttgatccattcaccgccgattacaaactcctcagaatcacttgg 9060836  T

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Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 9283923 - 9283984
Alignment:
Q  182 cacatgtcagactcttcaactctaaaacaaactcttggaaaattattcctgctatgccctac 243  Q
    |||||| ||||||||||| ||| ||||||||||| |||||||| ||||||  ||||||||||    
T  9283923 cacatgccagactcttcagctccaaaacaaactcgtggaaaataattcctattatgccctac 9283984  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 9357740 - 9357703
Alignment:
Q  16 attatccctttcctacctcttgctatccctaacattct 53  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  9357740 attatccctttcctccctcttcctatccctaacattct 9357703  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 10348190 - 10348121
Alignment:
Q  180 tccacatgtcagactcttcaactctaaaacaaactcttggaaaattattcctgctatgccctacgctctt 249  Q
    |||||| || |||||||||| ||  ||||||||||| ||||| || |||||||||||||| |||| ||||    
T  10348190 tccacaagtgagactcttcagcttgaaaacaaactcatggaagataattcctgctatgccgtacgatctt 10348121  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 9275093 - 9275029
Alignment:
Q  4 ggtaaatatcgtattatccctttcctacctcttgctatccctaacattcttgaatctgacaacat 68  Q
    |||||| |||| ||||||||||| || |||||| |||| |||||||||||  |||| ||||||||    
T  9275093 ggtaaacatcggattatcccttttctccctcttcctatacctaacattctcaaatcagacaacat 9275029  T

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Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 4 - 141
Target Start/End: Complemental strand, 26575445 - 26575308
Alignment:
Q  4 ggtaaatatcgtattatccctttcctacctcttgctatccctaacattcttgaatctgacaacatccgtcgcttctccttatgcgttcacggtttcggtt 103  Q
    ||||||||||| ||||||||||| || |||||| | ||||||||||||||  |||||||||||     |||   || ||||||||||||||| |||||||    
T  26575445 ggtaaatatcggattatcccttttctccctcttcccatccctaacattctccaatctgacaaccctaatcgtggctgcttatgcgttcacggcttcggtt 26575346  T
Q  104 ttgatcctttatccggtgattacaaactcctcagaatc 141  Q
    ||||| |||||||||| |||||||||||||||||||||    
T  26575345 ttgattctttatccggcgattacaaactcctcagaatc 26575308  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 81 - 147
Target Start/End: Complemental strand, 37462993 - 37462927
Alignment:
Q  81 cttatgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcagaatcgcttgg 147  Q
    ||||||||||||||| |||||||||||| ||||| |||| ||||||||||||||||||||| |||||    
T  37462993 cttatgcgttcacggcttcggttttgattctttaaccggcgattacaaactcctcagaatctcttgg 37462927  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 37462897 - 37462853
Alignment:
Q  180 tccacatgtcagactcttcaactctaaaacaaactcttggaaaat 224  Q
    ||||||||| |||||||||| ||| ||||||||||| ||||||||    
T  37462897 tccacatgtgagactcttcagctccaaaacaaactcgtggaaaat 37462853  T

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Target: scaffold0667 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 78 - 147
Target Start/End: Complemental strand, 4981 - 4912
Alignment:
Q  78 ctccttatgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcagaatcgcttgg 147  Q
    |||||||||||||||||| |||||||||||||||||| |||| ||||||||| |||||||| || |||||    
T  4981 ctccttatgcgttcacggcttcggttttgatcctttaaccggcgattacaaaatcctcagactctcttgg 4912  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 41966362 - 41966424
Alignment:
Q  85 tgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcagaatcgcttgg 147  Q
    ||||||||||| |||||||||||||| ||| || | ||| ||||||||||||||||| |||||    
T  41966362 tgcgttcacggattcggttttgatccattaaccagcgatcacaaactcctcagaatctcttgg 41966424  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 146
Target Start/End: Original strand, 29467429 - 29467489
Alignment:
Q  85 tgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcagaatcgcttg 146  Q
    ||||||||||| |||||||||||||| ||| ||| |||||||||||| ||||||||| ||||    
T  29467429 tgcgttcacggcttcggttttgatccattaaccgatgattacaaact-ctcagaatctcttg 29467489  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 29423759 - 29423703
Alignment:
Q  85 tgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcagaatc 141  Q
    |||||| |||| |||||||||||||| ||| | | ||||||||||||||||| ||||    
T  29423759 tgcgtttacggcttcggttttgatccattaactgatgattacaaactcctcacaatc 29423703  T

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