View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_16 (Length: 430)
Name: NF6875A_low_16
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 21 - 424
Target Start/End: Complemental strand, 30345854 - 30345451
Alignment:
| Q |
21 |
aagcatggcgttccatgccacctggggtggtaccaataggccattttctagagaaaacagcaattttgagtggtgaaagtggnnnnnnnngttgaaaaaa |
120 |
Q |
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| T |
30345854 |
aagcatggcgttccatgccacctggggtggtaccaataggccattttctagagaaaacagcaattttgagtggtgaaagtggttttttttgttgaaaaaa |
30345755 |
T |
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| Q |
121 |
tgagagcttgttccatgaaaattcagctaaagtaagatcacctgaccaagttttggattggtgagatgtaaaggtggtgcaaatagaagatgtggtgggg |
220 |
Q |
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| T |
30345754 |
tgagagcttgttccatgcaaattcagctaaagtaagatcacctgaccaagttttggattggtgagatgtaaaggtggtgcaaatagaagatgtggtgggg |
30345655 |
T |
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| Q |
221 |
gcgtggagaagaaaaagagctggtattgtgaagagaacaatgaataaaagggttgtgaagaaataaaaatttgaaggggagtttagtttcttggatttat |
320 |
Q |
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| T |
30345654 |
gtgtggagaagaaaaagagctggtattgtgaagagaacaatgaataaaagggttgtgaagaaataaaaatttgaaggggagtttggtttcttggatttat |
30345555 |
T |
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| Q |
321 |
tgtttaaggccatttcttcttggtgttctaaagatgtgtgcatatagaggtttcttgttttgatttttcttgtgatttgagttgtgtgttgaagttgaaa |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30345554 |
tgtttaaggccatttcttcttggtgttctaaagatgtgtgcatatagaggtttcttgttttgatttttcttgtgatttgagttgtgtgttgaagttgaaa |
30345455 |
T |
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| Q |
421 |
ttga |
424 |
Q |
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|||| |
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| T |
30345454 |
ttga |
30345451 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 10841810 - 10841878
Alignment:
| Q |
22 |
agcatggcgttccatgccacctggggtggtaccaataggccattttctagagaaaacagcaattttgag |
90 |
Q |
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| T |
10841810 |
agcatggcgttccatgccgcctggaacggttcccataggccattttctagaaaagactgcaattttgag |
10841878 |
T |
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