View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_160 (Length: 262)
Name: NF6875A_low_160
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_160 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 2 - 262
Target Start/End: Complemental strand, 33811003 - 33810743
Alignment:
| Q |
2 |
tcgagtttggagtttggttttggtatgtgatttgaagtggttggaggtatagagtaaagggatggctcgagatggtagcgttgtccctgctgacccacag |
101 |
Q |
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| T |
33811003 |
tcgagtttggagtttggttttggtatgtgatttgaagtggttggaggtatagggtaaagggatggctcgagatggtagcgttgtccctgctgacccacag |
33810904 |
T |
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| Q |
102 |
gctcttgtgaagaagaagacacagtcttctagaagctggattgcttttgatggtactggccaagggtctttgcttgatgtggacaagtatgctatcatgc |
201 |
Q |
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| T |
33810903 |
gctcttgtgaagaagaagacacagtcttctagaagctggattgcttttgatggtactggccaagggtctttgcttgatgtggacaagtatgctatcatgc |
33810804 |
T |
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| Q |
202 |
atagggttcagattaatgcacgtgatcttagaatccttgatcccttgctctcttacccctc |
262 |
Q |
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| T |
33810803 |
atagggttcagattaatgcacgtgatcttagaatccttgatcccttgctctcttacccctc |
33810743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 2 - 262
Target Start/End: Complemental strand, 33870472 - 33870212
Alignment:
| Q |
2 |
tcgagtttggagtttggttttggtatgtgatttgaagtggttggaggtatagagtaaagggatggctcgagatggtagcgttgtccctgctgacccacag |
101 |
Q |
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| T |
33870472 |
tcgagtttggagtttggttttggtatgtgatttgaagtggttggaggtatagggtaaagggatggctcgagatggtagcgttgtccctgctgacccacag |
33870373 |
T |
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| Q |
102 |
gctcttgtgaagaagaagacacagtcttctagaagctggattgcttttgatggtactggccaagggtctttgcttgatgtggacaagtatgctatcatgc |
201 |
Q |
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| T |
33870372 |
gctcttgtgaagaagaagacacagtcttctagaagctggattgcttttgatggtactggccaagggtctttgcttgatgtggacaagtatgctatcatgc |
33870273 |
T |
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| Q |
202 |
atagggttcagattaatgcacgtgatcttagaatccttgatcccttgctctcttacccctc |
262 |
Q |
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| T |
33870272 |
atagggttcagattaatgcacgtgatcttagaatccttgatcccttgctctcttacccctc |
33870212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 112 - 262
Target Start/End: Complemental strand, 33831068 - 33830918
Alignment:
| Q |
112 |
agaagaagacacagtcttctagaagctggattgcttttgatggtactggccaagggtctttgcttgatgtggacaagtatgctatcatgcatagggttca |
211 |
Q |
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| T |
33831068 |
agaagaagacacagtcttctacaagttggattcagtttgatgctacaggccaagggtggattcatgatgtggacaagtatgttatcatgaatagggttca |
33830969 |
T |
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| Q |
212 |
gattaatgcacgtgatcttagaatccttgatcccttgctctcttacccctc |
262 |
Q |
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| T |
33830968 |
tattgatgcacgtgatcttagaatccttgatcctttgccctcttacccctc |
33830918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 112 - 262
Target Start/End: Complemental strand, 33893231 - 33893081
Alignment:
| Q |
112 |
agaagaagacacagtcttctagaagctggattgcttttgatggtactggccaagggtctttgcttgatgtggacaagtatgctatcatgcatagggttca |
211 |
Q |
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| T |
33893231 |
agaagaagacacagtcttctacaagttggattcagtttgatgctacaggccaagggtggattcatgatgtggacaagtatgttatcatgaatagggttca |
33893132 |
T |
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| Q |
212 |
gattaatgcacgtgatcttagaatccttgatcccttgctctcttacccctc |
262 |
Q |
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||| |||||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
33893131 |
tattgatgcacgtgatcttagaatccttgatcctttgccctcttacccctc |
33893081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 108; Significance: 3e-54; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 106 - 261
Target Start/End: Original strand, 24408805 - 24408960
Alignment:
| Q |
106 |
ttgtgaagaagaagacacagtcttctagaagctggattgcttttgatggtactggccaagggtctttgcttgatgtggacaagtatgctatcatgcatag |
205 |
Q |
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|||||||||||||||||||||||| | |||||||||||||||| ||| ||| |||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
24408805 |
ttgtgaagaagaagacacagtcttttggaagctggattgctttggatagtaatggccactggtctcaaattgatgtggacaagtatgctatcatgcatag |
24408904 |
T |
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| Q |
206 |
ggttcagattaatgcacgtgatcttagaatccttgatcccttgctctcttacccct |
261 |
Q |
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| T |
24408905 |
ggttcagattaatgcacatgatcttagaatccttgatcccttgctctcttacccct |
24408960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 175 - 262
Target Start/End: Complemental strand, 24410211 - 24410124
Alignment:
| Q |
175 |
ttgatgtggacaagtatgctatcatgcatagggttcagattaatgcacgtgatcttagaatccttgatcccttgctctcttacccctc |
262 |
Q |
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| T |
24410211 |
ttgatgtggacaagtatgctatcatgcatagggttcagattaatgcatgtgatcttagaatccttgatcccttgctctcttacccctc |
24410124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 106 - 148
Target Start/End: Complemental strand, 24410676 - 24410634
Alignment:
| Q |
106 |
ttgtgaagaagaagacacagtcttctagaagctggattgcttt |
148 |
Q |
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| T |
24410676 |
ttgtgaagaagaagacacagtcttttggaagctggattgcttt |
24410634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 85
Target Start/End: Original strand, 24408777 - 24408808
Alignment:
| Q |
54 |
agtaaagggatggctcgagatggtagcgttgt |
85 |
Q |
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| T |
24408777 |
agtaaagggatggctcgagatggtagcgttgt |
24408808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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