View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6875A_low_162 (Length: 261)
Name: NF6875A_low_162
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_162 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 16 - 255
Target Start/End: Complemental strand, 43798137 - 43797898
Alignment:
| Q |
16 |
atcaataatgacgaaccaactagtttgaacaagacataactcaaaaagtattcaagcgtcctcgctatcgcaccccatattaacaagagcataaacacat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43798137 |
atcaataatgacgaaccaactagtttgaacaagacataactcaaaaagtattcaagcgtcctcgctatcgcaccccatattaacaagagcataaacacat |
43798038 |
T |
|
| Q |
116 |
caattagctgcacaatactagtcacaaactctaacctcccaatccatcgaaagcaaactaagaatcttggtaattaagcaccaacccactacactagtag |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
43798037 |
taattagctgcacaatactagtcacaaactctaacctcccaatccatcgcaagcaaactaagaatcttgttaattaagcaccaacccactacactagtag |
43797938 |
T |
|
| Q |
216 |
gattacatccctttaaatttttcaccacaacttccgaatc |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43797937 |
gattacatccctttaaatttttcaccacaacttccgaatc |
43797898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University