View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6875A_low_166 (Length: 258)
Name: NF6875A_low_166
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_166 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 6 - 257
Target Start/End: Complemental strand, 33064126 - 33063877
Alignment:
| Q |
6 |
caacaatatcatgcccagtatgaacagtatttaacggacatttatttgatcaactgttgtacaagatcagttcagttagaatgaatgatttaatatgtta |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33064126 |
caacaatatcatgcccagtatgaacagtatttaacggacatttatttgatcaactgttgtacaagatcagttcagttagaatgaatgatttaatatgtta |
33064027 |
T |
|
| Q |
106 |
tgtttttagaaaacggtatagataaccatcatcatgcatcagaaagactgagagtatatagtatggtcaaatattagcannnnnnnnnnataaaaagaag |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
33064026 |
tgtttttagaaaacggtatagataaccatcatcatgcatcagaaagactgagagtatatagtattgtcaaatattagca--tttttttaataaaaagaag |
33063929 |
T |
|
| Q |
206 |
gccattgtcaatgattataagagttagtccgtcccgagctaaaactcatttg |
257 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
33063928 |
gccattgtcaatgattataagagtcagtccgtcccgagctaaaactcatttg |
33063877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University