View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_17 (Length: 429)
Name: NF6875A_low_17
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_17 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 20 - 429
Target Start/End: Original strand, 14321030 - 14321438
Alignment:
| Q |
20 |
catcaacacggaagcggagccacataccatcaactccctggaacaaatgtcagcaagctaaacagctctttcgaactccacaatccaagccaaacataga |
119 |
Q |
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| T |
14321030 |
catcaacacggaagcggacccacataccatcaactccctggaacaaatgtcaacaagctaaacggctctttctaac-ccacaatccaagccaaacataga |
14321128 |
T |
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| Q |
120 |
gaacaacgagatatcatattagtcagaatcaatcatgagatacatatattaagagggcaaacaactgaaagacgatgctcatcacagtccgccggtggca |
219 |
Q |
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| T |
14321129 |
gaacgacgagatatcatattagtcaaaatcgatcatgagatacatatattaagggggcaaacaattgaaagacgatgctcatcatagtccgccggtggca |
14321228 |
T |
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| Q |
220 |
cctgaaacaaccgcgactaatataaaaaacaccaacccacaagcacggaggcggtagatcttaaaacaaattgccaccaaccatccataaactagataca |
319 |
Q |
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| T |
14321229 |
ccttaaacaaccgcgacgaatatcaaaaacaccaacccaccggcacggaggtggtagatcttaaaacaaattgtcaccaaccatccagaaactagataca |
14321328 |
T |
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| Q |
320 |
acaccgcatcacgacccttgacaaacctttaagtcgactacatctaagaggacaaccgaagaaggttgggaagtagccgatgcttttaccaccggtagaa |
419 |
Q |
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| T |
14321329 |
acaccgcatcgcgacccttgacaaacctttaagtcgacgacatctaagaggacaaccgaagaaggttgggaagtagccgatgcttgtaccaccggtagaa |
14321428 |
T |
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| Q |
420 |
aggcgacaca |
429 |
Q |
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| T |
14321429 |
aggcgacaca |
14321438 |
T |
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Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 267 - 390
Target Start/End: Complemental strand, 41907831 - 41907708
Alignment:
| Q |
267 |
gaggcggtagatcttaaaacaaattgccaccaaccatccataaactagatacaacaccgcatcacgacccttgacaaacctttaagtcgactacatctaa |
366 |
Q |
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||||||||| |||| |||||| || |||| |||||||| | ||||| ||||||||||| ||||| ||||||| |||||||| |||| || |||| || |
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| T |
41907831 |
gaggcggtaaatctgaaaacagatcgccagcaaccatctagaaactggatacaacaccatatcacaacccttggaaaacctttcagtcaacggcatcgaa |
41907732 |
T |
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| Q |
367 |
gaggacaaccgaagaaggttggga |
390 |
Q |
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| T |
41907731 |
gaggacaaccggagaatgttggga |
41907708 |
T |
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