View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_171 (Length: 254)
Name: NF6875A_low_171
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_171 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 22 - 254
Target Start/End: Original strand, 12487360 - 12487592
Alignment:
| Q |
22 |
tcactctctaagttaaaaatatttttgtcaagtatgtcttttcgctcgcccacacgaaggcataggttgtgcacctgaatgcacaactaaagatttaaaa |
121 |
Q |
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| T |
12487360 |
tcactctctaagttaaaaatatgtttgtcaagtatgtcttttcgctcgcccacacgaaggcataggttgtgcacctgaatgcacaactaaagatttaaaa |
12487459 |
T |
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| Q |
122 |
tgtagttctacgactctatgctaatgctataaaagtaacttttttatctttttacataattaaggtttgtgccttggaacatgtttattgtggacatgtg |
221 |
Q |
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| T |
12487460 |
tgtagttctacgactctatgctaatgctataaaagtaacttttttatctttttacataattaaggtttgtgccttggaacatgtttattgtggacatgtg |
12487559 |
T |
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| Q |
222 |
gaatggaagtcactgatattattatagtttgca |
254 |
Q |
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| T |
12487560 |
gaatggaagtcactgatattattatagtttgca |
12487592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 22 - 183
Target Start/End: Original strand, 12541251 - 12541413
Alignment:
| Q |
22 |
tcactctctaagttaaaaatatttttgtcaagtatgtcttttcgctcgcccacacgaaggcataggttgtgcacctgaatgcacaactaaagatttaaaa |
121 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12541251 |
tcactctctaagttaaaaatatgtttgtcaagtatgtcttttcgctcgcccacacgaaggcataggttgtgcacctgaatgcacaactaaagatttaaaa |
12541350 |
T |
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| Q |
122 |
tgtagttctacgactctatgctaatgctataaaagtaac-ttttttatctttttacataatta |
183 |
Q |
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| T |
12541351 |
tgtagttctacgactctatgctaatgctattagagtaactttttttatctttttacataatta |
12541413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 140 - 190
Target Start/End: Original strand, 12508747 - 12508797
Alignment:
| Q |
140 |
tgctaatgctataaaagtaacttttttatctttttacataattaaggtttg |
190 |
Q |
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| T |
12508747 |
tgctaatgctctaaaagtaacttttttatcttttgacataattaaggtttg |
12508797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 12508660 - 12508722
Alignment:
| Q |
36 |
aaaaatatttttgtcaagtatgtcttttcgctcgcccacacgaaggcataggttgtgcacctg |
98 |
Q |
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| T |
12508660 |
aaaaataagtttgtcaattatgtcttttctcttgccgacacaaaggcataggttgtgcacctg |
12508722 |
T |
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