View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_172 (Length: 254)
Name: NF6875A_low_172
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_172 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 7 - 254
Target Start/End: Original strand, 39625432 - 39625690
Alignment:
| Q |
7 |
caaatactaccatccaactctttgcaataccctttcgtttacttcctctcactgtcgccaccattgtcgctg---------------ctttttccttctc |
91 |
Q |
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| T |
39625432 |
caaatactaccatccaactctttgcaatacccttttgtttacttcctctcactgtcgccaccattgtcgctgccatccctactgctgctttttccttctc |
39625531 |
T |
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| Q |
92 |
ttctttactcaaccttcccatcgcacatcaatcttaatcaattccgatgcaatatttctctgtttaatttgtaagctaatactaattttgatgaataact |
191 |
Q |
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| T |
39625532 |
ttctttactcaacattcccatcgcacatcaatcttaatcaattccgatgcaatatttctctg-----tttgtaagctaatactaattttgatgaataact |
39625626 |
T |
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| Q |
192 |
aggtctttcgatcttagtttaaatttccttaaatag-ttgttaggtgattactggttagttatg |
254 |
Q |
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| T |
39625627 |
aggtctttcgatcttagtttaaatttccttaaatagtttgttaggtgattactggttagttatg |
39625690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 7 - 254
Target Start/End: Original strand, 39634982 - 39635240
Alignment:
| Q |
7 |
caaatactaccatccaactctttgcaataccctttcgtttacttcctctcactgtcgccaccattgtcgctg---------------ctttttccttctc |
91 |
Q |
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| T |
39634982 |
caaatactaccatccaactctttgcaatacccttttgtttacttcctctcactgtcgccaccattgtcgctgccatccctactgctgctttttccttctc |
39635081 |
T |
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| Q |
92 |
ttctttactcaaccttcccatcgcacatcaatcttaatcaattccgatgcaatatttctctgtttaatttgtaagctaatactaattttgatgaataact |
191 |
Q |
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| T |
39635082 |
ttctttactcaacattcccatcgcacatcaatcttaatcaattccgatgcaatatttctctg-----tttgtaagctaatactaattttgatgaataact |
39635176 |
T |
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| Q |
192 |
aggtctttcgatcttagtttaaatttccttaaatag-ttgttaggtgattactggttagttatg |
254 |
Q |
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| T |
39635177 |
aggtctttcgatcttagtttaaatttccttaaatagtttgttaggtgattactggttagttatg |
39635240 |
T |
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