View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6875A_low_179 (Length: 251)
Name: NF6875A_low_179
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_179 |
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| [»] chr8 (2 HSPs) |
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| [»] chr1 (4 HSPs) |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 24782592 - 24782824
Alignment:
| Q |
19 |
acatcatgatagtttgagtgcacatgttcaaattaatgaatgtaaaagagctctttttgacatgaatcctcacaaggcgccgggagaggatgggtacccc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24782592 |
acatcatgatagtttgagtgcacatgttcaaattaatgaatgtaaaagagctctttttgacatgaatcctcacaaggcgccgggagaggatgggtacccc |
24782691 |
T |
|
| Q |
119 |
gctatattttttcaaaaatgttgggacacagttgctgattctatataccagtttgtgaaccaggtttgggttaccccttctcttatatcttctattaata |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24782692 |
gctatattttttcaaaaatgttgggacacagttgctgattctatataccagtttgtgaaccaggtttgggttaccccttctcttatatcttctattaata |
24782791 |
T |
|
| Q |
219 |
atactctcattgtgatgatccctaagattgata |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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| T |
24782792 |
atactctcattgtgatgatccctaagattgata |
24782824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 35198400 - 35198168
Alignment:
| Q |
19 |
acatcatgatagtttgagtgcacatgttcaaattaatgaatgtaaaagagctctttttgacatgaatcctcacaaggcgccgggagaggatgggtacccc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35198400 |
acatcatgatagtttgagtgcacatgttcaaattaatgaatgtaaaagagctctttttgacatgaatcctcacaaggcgccgggagaggatgggtacccc |
35198301 |
T |
|
| Q |
119 |
gctatattttttcaaaaatgttgggacacagttgctgattctatataccagtttgtgaaccaggtttgggttaccccttctcttatatcttctattaata |
218 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35198300 |
gctatattttttcaaaaatgttgggacacagttgctgattctatataccagtttgtgaaccaggtttgggttaccccttctcttatatcttctattaata |
35198201 |
T |
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| Q |
219 |
atactctcattgtgatgatccctaagattgata |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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| T |
35198200 |
atactctcattgtgatgatccctaagattgata |
35198168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 8057750 - 8057518
Alignment:
| Q |
19 |
acatcatgatagtttgagtgcacatgttcaaattaatgaatgtaaaagagctctttttgacatgaatcctcacaaggcgccgggagaggatgggtacccc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8057750 |
acatcatgatagtttgagtgcacatgttcaaattaatgaatgtaaaagagctctttttgacatgaatcctcacaaggcgccgggagaggatgggtacccc |
8057651 |
T |
|
| Q |
119 |
gctatattttttcaaaaatgttgggacacagttgctgattctatataccagtttgtgaaccaggtttgggttaccccttctcttatatcttctattaata |
218 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8057650 |
gctatattttttcaaaaatgttgggacacagttgctgattctatataccagtttgtgaaccaggtttgggttaccccttctcttatatcttctattaata |
8057551 |
T |
|
| Q |
219 |
atactctcattgtgatgatccctaagattgata |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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| T |
8057550 |
atactctcattgtgatgatccctaagattgata |
8057518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 49575430 - 49575198
Alignment:
| Q |
19 |
acatcatgatagtttgagtgcacatgttcaaattaatgaatgtaaaagagctctttttgacatgaatcctcacaaggcgccgggagaggatgggtacccc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49575430 |
acatcatgatagtttgagtgcacatgttcaaattaatgaatgtaaaagagctctttttgacatgaatcctcacaaggcgccgggagaggatgggtacccc |
49575331 |
T |
|
| Q |
119 |
gctatattttttcaaaaatgttgggacacagttgctgattctatataccagtttgtgaaccaggtttgggttaccccttctcttatatcttctattaata |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49575330 |
gctatattttttcaaaaatgttgggacacagttgctgattctatataccagtttgtgaaccaggtttgggttaccccttctcttatatcttctattaata |
49575231 |
T |
|
| Q |
219 |
atactctcattgtgatgatccctaagattgata |
251 |
Q |
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|
||||||||||||||||||||||||||||||||| |
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| T |
49575230 |
atactctcattgtgatgatccctaagattgata |
49575198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 67 - 251
Target Start/End: Original strand, 36027478 - 36027662
Alignment:
| Q |
67 |
agctctttttgacatgaatcctcacaaggcgccgggagaggatgggtaccccgctatattttttcaaaaatgttgggacacagttgctgattctatatac |
166 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
36027478 |
agctctttttgacatgaatcctcacaaggcgccgggagaggatgggtaccccgctatattttttcaaaaatgttaggacacagttgctgattctatatac |
36027577 |
T |
|
| Q |
167 |
cagtttgtgaaccaggtttgggttaccccttctcttatatcttctattaataatactctcattgtgatgatccctaagattgata |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36027578 |
cagtttgtgaaccaggtttgggttaccccttctcttatatcttctattaataatactctcattgtgatgatccctaagattgata |
36027662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 249
Target Start/End: Complemental strand, 50955079 - 50955000
Alignment:
| Q |
170 |
tttgtgaaccaggtttgggttaccccttctcttatatcttctattaataatactctcattgtgatgatccctaagattga |
249 |
Q |
| |
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||||| || ||||||||||| | |||||||| || |||| |||||||||||| || ||||||||||| ||||| ||||| |
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| T |
50955079 |
tttgtcaatcaggtttgggtaaatccttctctcatttcttttattaataatacccttattgtgatgattcctaaaattga |
50955000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 111704 - 111469
Alignment:
| Q |
19 |
acatcatgatagtttgagtgcacatgttcaaattaatgaatgtaaaagagctctttttgacatgaatcctcacaaggcgccgggagaggatgggtaccc- |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||| |
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| T |
111704 |
acatcatgatagtttgagtgcacatgttcaaattaatgaatgtaaaagagctctttttgatatgaatcctcacaaggcgccgagagaggatggatacctt |
111605 |
T |
|
| Q |
118 |
--cgctatattttttcaaaaatgttgggacacagttgctgattctatataccagtttgtgaaccaggtttgggttaccccttctcttatatcttctatta |
215 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
111604 |
ttcgctatattttttcaaaaatgctgggacacagttgctgattctatataccagtttgtgaaccaggtttgggttaccctttctcttatatcttctatta |
111505 |
T |
|
| Q |
216 |
ataatactctcattgtgatgatccctaagattgata |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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| T |
111504 |
ataatactctcattgtgatgatccctaagattgata |
111469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 63 - 223
Target Start/End: Complemental strand, 54814931 - 54814771
Alignment:
| Q |
63 |
aaagagctctttttgacatgaatcctcacaaggcgccgggagaggatgggtaccccgctatattttttcaaaaatgttgggacacagttgctgattctat |
162 |
Q |
| |
|
|||||||| | |||||||||| ||||| ||||| || ||||||||||| ||||| ||| | |||||||| || |||||||||| |||| |||||| | |
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| T |
54814931 |
aaagagctttatttgacatgagccctcataaggctcctggagaggatggctaccctgctgtcttttttcagcaacgttgggacaccgttgttgattccct |
54814832 |
T |
|
| Q |
163 |
ataccagtttgtgaaccaggtttgggttaccccttctcttatatcttctattaataatact |
223 |
Q |
| |
|
| | |||| |||||||||||||| | |||||| |||| |||| ||||||||||||| |
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|
| T |
54814831 |
ttttaaatttgccaaccaggtttgggtaaatccttcttttatctcttttattaataatact |
54814771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 225
Target Start/End: Original strand, 34566929 - 34567074
Alignment:
| Q |
80 |
atgaatcctcacaaggcgccgggagaggatgggtaccccgctatattttttcaaaaatgttgggacacagttgctgattctatataccagtttgtgaacc |
179 |
Q |
| |
|
||||||||||| ||| |||| ||||| || |||||||| ||| | || || || |||||||| |||| || |||| || | ||||||| |||||||| |
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| T |
34566929 |
atgaatcctcataagacgcccggagaagacgggtaccctgctcttttcttctaataatgttggaacactatttctgagtcattgtaccagtatgtgaacc |
34567028 |
T |
|
| Q |
180 |
aggtttgggttaccccttctcttatatcttctattaataatactct |
225 |
Q |
| |
|
| |||| ||||| |||| |||||| |||| |||||||||||||| |
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| T |
34567029 |
atgttttggttaatccttttcttatctcttacattaataatactct |
34567074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 243
Target Start/End: Original strand, 8033262 - 8033326
Alignment:
| Q |
179 |
caggtttgggttaccccttctcttatatcttctattaataatactctcattgtgatgatccctaa |
243 |
Q |
| |
|
||||||||||| | |||||||| || ||||||||||||||||| || ||||| ||||| ||||| |
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|
| T |
8033262 |
caggtttgggtaaatccttctctcatctcttctattaataatacactgattgttatgatacctaa |
8033326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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