View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_184 (Length: 250)
Name: NF6875A_low_184
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_184 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 20 - 249
Target Start/End: Original strand, 14321030 - 14321258
Alignment:
| Q |
20 |
catcaacacggaagcggagccacataccatcaactccctggaacaaatgtcagcaagctaaacagctctttcgaactccacaatccaagccaaacataga |
119 |
Q |
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| T |
14321030 |
catcaacacggaagcggacccacataccatcaactccctggaacaaatgtcaacaagctaaacggctctttctaac-ccacaatccaagccaaacataga |
14321128 |
T |
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| Q |
120 |
gaacaacgagatatcatattagtcagaatcaatcatgagatacatatattaagagggcaaacaactgaaagacgatgctcatcacagtccgccggtggca |
219 |
Q |
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|||| |||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
14321129 |
gaacgacgagatatcatattagtcaaaatcgatcatgagatacatatattaagggggcaaacaattgaaagacgatgctcatcatagtccgccggtggca |
14321228 |
T |
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| Q |
220 |
cctgaaacgaccgcgactaatataaaaaac |
249 |
Q |
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||| |||| |||||||| ||||| |||||| |
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| T |
14321229 |
ccttaaacaaccgcgacgaatatcaaaaac |
14321258 |
T |
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