View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_188 (Length: 250)
Name: NF6875A_low_188
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_188 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 12 - 202
Target Start/End: Complemental strand, 28678469 - 28678278
Alignment:
| Q |
12 |
acattgtcctattaaattgatgaattcaaatctgtgtttccagaactatttttcatcaatcctcttcgactaatgcttatttttcattcaattt-gtaca |
110 |
Q |
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| T |
28678469 |
acattgacctattaaatttatgaattcaaatctgtgtttccagaactatttttcatcaatcctcttcgactaatgcttatttttcattcaattttgtaca |
28678370 |
T |
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| Q |
111 |
tgcacgatacaagtatataagtgttccaattcctctactatgtttttatgcttttatacacacacattaatatgctttgccattgctctgta |
202 |
Q |
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| T |
28678369 |
tccacgatacaagtatataagtgttccaattcctctactatgtttttatgcttttatacacacacattaatatgctttgccattgctctgta |
28678278 |
T |
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