View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6875A_low_193 (Length: 249)

Name: NF6875A_low_193
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6875A_low_193
NF6875A_low_193
[»] chr8 (4 HSPs)
chr8 (1-237)||(24782815-24783051)
chr8 (1-233)||(35197945-35198177)
chr8 (5-215)||(41997898-41998108)
chr8 (4-150)||(26619079-26619225)
[»] chr1 (7 HSPs)
chr1 (1-237)||(8057291-8057527)
chr1 (1-237)||(36027653-36027889)
chr1 (1-237)||(49574971-49575207)
chr1 (8-237)||(46021335-46021564)
chr1 (4-191)||(5306422-5306609)
chr1 (4-191)||(23947395-23947582)
chr1 (4-191)||(50954817-50955004)
[»] scaffold0012 (1 HSPs)
scaffold0012 (1-237)||(111242-111478)
[»] chr7 (3 HSPs)
chr7 (5-215)||(8033329-8033539)
chr7 (5-189)||(22944944-22945128)
chr7 (40-203)||(1610346-1610509)
[»] chr3 (2 HSPs)
chr3 (7-191)||(46426258-46426442)
chr3 (7-191)||(54814562-54814746)
[»] chr2 (1 HSPs)
chr2 (98-147)||(34567098-34567147)


Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 24782815 - 24783051
Alignment:
1 aagattgataaacctgaatttgtctctcaatttagacctattgctttatgtaatgttatttataagataatttctaaggttattgtcaacagaatcaagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
24782815 aagattgataaacctgaatttgtctctcaatttagacctattgctttatgtaatgttatttataagataatttctaaggttattgtcaacagaatcaagc 24782914  T
101 cgttgcttgatggtattatttctccatatcagtccagttttattccaggtagaagtatccaccataatattattgtggctcaggagatggtacattccat 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
24782915 cattgcttgatggtattatttctccatatcagtccagttttattccaggtagaagtatccaccataatattattgtggctcaggagatggtacattccat 24783014  T
201 ggccagaatgaaaggcaacaagatgttgatgtccatc 237  Q
    ||||||||||||||||||||||||||| |||||||||    
24783015 ggccagaatgaaaggcaacaagatgttcatgtccatc 24783051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 35198177 - 35197945
Alignment:
1 aagattgataaacctgaatttgtctctcaatttagacctattgctttatgtaatgttatttataagataatttctaaggttattgtcaacagaatcaagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
35198177 aagattgataaacctgaatttgtctctcaatttagacctattgctttatgtaatgttatttataagataatatctaaggttattgtcaacagaatcaagc 35198078  T
101 cgttgcttgatggtattatttctccatatcagtccagttttattccaggtagaagtatccaccataatattattgtggctcaggagatggtacattccat 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
35198077 cattgcttgatggtattatttctccatatcagtccagttttattccaggtagaagtatccaccataatattattgtggctcaggagatggtacattccat 35197978  T
201 ggccagaatgaaaggcaacaagatgttgatgtc 233  Q
    ||| ||||||||||||||||||||||| |||||    
35197977 ggcaagaatgaaaggcaacaagatgttcatgtc 35197945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 5 - 215
Target Start/End: Original strand, 41997898 - 41998108
Alignment:
5 ttgataaacctgaatttgtctctcaatttagacctattgctttatgtaatgttatttataagataatttctaaggttattgtcaacagaatcaagccgtt 104  Q
    ||||||| ||||| ||||| |||||||||||||||||| ||||||| |||||||||||||| || |||||||| |||||||| || || || ||||| ||    
41997898 ttgataagcctgattttgtttctcaatttagacctatttctttatgcaatgttatttataaaattatttctaaagttattgttaataggattaagccttt 41997997  T
105 gcttgatggtattatttctccatatcagtccagttttattccaggtagaagtatccaccataatattattgtggctcaggagatggtacattccatggcc 204  Q
    |||||||  ||||||||| || ||||| || ||||||||||| ||| | |||||||| |||||||||||||| ||||| ||||||||  |||| ||| ||    
41997998 gcttgataatattatttcaccttatcaatctagttttattccgggtcgtagtatccatcataatattattgtagctcaagagatggtgtattctatgtcc 41998097  T
205 agaatgaaagg 215  Q
    | |||||||||    
41998098 aaaatgaaagg 41998108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 150
Target Start/End: Complemental strand, 26619225 - 26619079
Alignment:
4 attgataaacctgaatttgtctctcaatttagacctattgctttatgtaatgttatttataagataatttctaaggttattgtcaacagaatcaagccgt 103  Q
    ||||| |||||  ||||||| | ||| ||||| |||||| | |||||||||||||| ||||| || |||||||| || ||||| ||||| || || || |    
26619225 attgagaaaccataatttgtttatcagtttaggcctatttcattatgtaatgttatatataaaattatttctaaagtgattgttaacaggattaaacctt 26619126  T
104 tgcttgatggtattatttctccatatcagtccagttttattccaggt 150  Q
    || ||||| |||||||||||||||| ||||  |||||||||||||||    
26619125 tgtttgatcgtattatttctccataccagtttagttttattccaggt 26619079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 8057527 - 8057291
Alignment:
1 aagattgataaacctgaatttgtctctcaatttagacctattgctttatgtaatgttatttataagataatttctaaggttattgtcaacagaatcaagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
8057527 aagattgataaacctgaatttgtctctcaatttagacctattgctttatgtaatgttatttataagataatttctaaggttattgtcaacagaatcaagc 8057428  T
101 cgttgcttgatggtattatttctccatatcagtccagttttattccaggtagaagtatccaccataatattattgtggctcaggagatggtacattccat 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
8057427 cattgcttgatggtattatttctccatatcagtccagttttattccaggtagaagtatccaccataatattattgtggctcaggagatggtacattccat 8057328  T
201 ggccagaatgaaaggcaacaagatgttgatgtccatc 237  Q
    ||||||||||||||||||||||||||| |||||||||    
8057327 ggccagaatgaaaggcaacaagatgttcatgtccatc 8057291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 36027653 - 36027889
Alignment:
1 aagattgataaacctgaatttgtctctcaatttagacctattgctttatgtaatgttatttataagataatttctaaggttattgtcaacagaatcaagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
36027653 aagattgataaacctgaatttgtctctcaatttagacctattgctttatgtaatgttatttataagataatttctaaggttattgtcaacagaatcaagc 36027752  T
101 cgttgcttgatggtattatttctccatatcagtccagttttattccaggtagaagtatccaccataatattattgtggctcaggagatggtacattccat 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
36027753 cattgcttgatggtattatttctccatatcagtccagttttattccaggtagaagtatccaccataatattattgtggctcaggagatggtacattccat 36027852  T
201 ggccagaatgaaaggcaacaagatgttgatgtccatc 237  Q
    ||||||||||||||||||||||||||| |||||||||    
36027853 ggccagaatgaaaggcaacaagatgttcatgtccatc 36027889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 49575207 - 49574971
Alignment:
1 aagattgataaacctgaatttgtctctcaatttagacctattgctttatgtaatgttatttataagataatttctaaggttattgtcaacagaatcaagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
49575207 aagattgataaacctgaatttgtctctcaatttagacctattgctttatgtaatgttatttataagataatttctaaggttattgtcaacagaatcaagc 49575108  T
101 cgttgcttgatggtattatttctccatatcagtccagttttattccaggtagaagtatccaccataatattattgtggctcaggagatggtacattccat 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
49575107 cattgcttgatggtattatttctccatatcagtccagttttattccaggtagaagtatccaccataatattattgtggctcaggagatggtacattccat 49575008  T
201 ggccagaatgaaaggcaacaagatgttgatgtccatc 237  Q
    ||||||||||||||||||||||||||| |||||||||    
49575007 ggccagaatgaaaggcaacaagatgttcatgtccatc 49574971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 46021564 - 46021335
Alignment:
8 ataaacctgaatttgtctctcaatttagacctattgctttatgtaatgttatttataagataatttctaaggttattgtcaacagaatcaagccgttgct 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
46021564 ataaacctgaatttgtctctcaatttagacctattgctttatgtaatgttatttataagataatctctaaggttattgtcaacagaatcaagccattgct 46021465  T
108 tgatggtattatttctccatatcagtccagttttattccaggtagaagtatccaccataatattattgtggctcaggagatggtacattccatggccaga 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
46021464 tgatggtattatttctccatatcagtccagttttattccaggtagaagtatccaccataatattattgtggctcaggagatggtacattccatggccaga 46021365  T
208 atgaaaggcaacaagatgttgatgtccatc 237  Q
    |||||||||||||||||||| |||||||||    
46021364 atgaaaggcaacaagatgttcatgtccatc 46021335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 4 - 191
Target Start/End: Original strand, 5306422 - 5306609
Alignment:
4 attgataaacctgaatttgtctctcaatttagacctattgctttatgtaatgttatttataagataatttctaaggttattgtcaacagaatcaagccgt 103  Q
    ||||| ||||| |||||||| ||||| ||||| |||||| | |||||||||||||||||||| || |||||||| || ||||| ||||| || || || |    
5306422 attgagaaaccagaatttgtttctcagtttaggcctatttcattatgtaatgttatttataaaattatttctaaagtgattgttaacaggattaaacctt 5306521  T
104 tgcttgatggtattatttctccatatcagtccagttttattccaggtagaagtatccaccataatattattgtggctcaggagatggt 191  Q
    |||||||| |||||||||||||||| ||||| ||||||||||||||| | |  || ||||| || |||||||||||||| || |||||    
5306522 tgcttgatcgtattatttctccataccagtctagttttattccaggtcgtaacatacaccacaacattattgtggctcaagaaatggt 5306609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 191
Target Start/End: Original strand, 23947395 - 23947582
Alignment:
4 attgataaacctgaatttgtctctcaatttagacctattgctttatgtaatgttatttataagataatttctaaggttattgtcaacagaatcaagccgt 103  Q
    ||||| ||||| |||||||| ||||| ||||| |||||| | |||||||||||||||||||| || |||||||| || ||||| ||||  || || || |    
23947395 attgagaaaccagaatttgtttctcagtttaggcctatttcattatgtaatgttatttataaaattatttctaaagtgattgttaacaagattaaacctt 23947494  T
104 tgcttgatggtattatttctccatatcagtccagttttattccaggtagaagtatccaccataatattattgtggctcaggagatggt 191  Q
    | |||||| |||||||||||||||| ||||| ||||||||||||||| | |  || ||||| || |||||||||||||| || |||||    
23947495 tccttgatcgtattatttctccataccagtctagttttattccaggtcgtaacatacaccacaacattattgtggctcaagaaatggt 23947582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 50955004 - 50954817
Alignment:
4 attgataaacctgaatttgtctctcaatttagacctattgctttatgtaatgttatttataagataatttctaaggttattgtcaacagaatcaagccgt 103  Q
    ||||| ||||| |||||||| ||||| ||||| |||||| | |||||||||||||| ||||| || |||||||| || ||||| ||||  || || || |    
50955004 attgagaaaccagaatttgtttctcagtttaggcctatttcattatgtaatgttatatataaaattatttctaaagtgattgttaacatgattaaacctt 50954905  T
104 tgcttgatggtattatttctccatatcagtccagttttattccaggtagaagtatccaccataatattattgtggctcaggagatggt 191  Q
    |||||||| |||||||||||||||| ||||| |||||||||| |||| | |  || ||||| || |||||||||||||| || |||||    
50954904 tgcttgatcgtattatttctccataccagtctagttttattctaggtcgtaacatacaccacaacattattgtggctcaagaaatggt 50954817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 111478 - 111242
Alignment:
1 aagattgataaacctgaatttgtctctcaatttagacctattgctttatgtaatgttatttataagataatttctaaggttattgtcaacagaatcaagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
111478 aagattgataaacctgaatttgtctctcaatttagacctattgctttatgtaatgttatttataagataatttctaaggttattgtcaacagaatcaagc 111379  T
101 cgttgcttgatggtattatttctccatatcagtccagttttattccaggtagaagtatccaccataatattattgtggctcaggagatggtacattccat 200  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
111378 ctttgcttgatggtattatttctccatatcagtccagttttattccaggtagaagtatccaccataatattattgtcgctcaggagatggtacattccat 111279  T
201 ggccagaatgaaaggcaacaagatgttgatgtccatc 237  Q
    ||| ||||||||||||||||||||||| |||||||||    
111278 ggctagaatgaaaggcaacaagatgttcatgtccatc 111242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 5 - 215
Target Start/End: Original strand, 8033329 - 8033539
Alignment:
5 ttgataaacctgaatttgtctctcaatttagacctattgctttatgtaatgttatttataagataatttctaaggttattgtcaacagaatcaagccgtt 104  Q
    ||||||| ||||| ||||| |||||||||||||||||| ||||||| |||||||||||||| || |||||||| |||||||| || || || ||||| ||    
8033329 ttgataagcctgattttgtttctcaatttagacctatttctttatgcaatgttatttataaaattatttctaaagttattgttaataggattaagccttt 8033428  T
105 gcttgatggtattatttctccatatcagtccagttttattccaggtagaagtatccaccataatattattgtggctcaggagatggtacattccatggcc 204  Q
    |||||||  ||||||||| || ||||| || ||||||||||| | | | || ||||| |||||||||||||| ||||| ||||||||  |||| ||| ||    
8033429 gcttgataatattatttcaccttatcaatctagttttattccggttcgtagcatccatcataatattattgtagctcaagagatggtgtattctatgtcc 8033528  T
205 agaatgaaagg 215  Q
    | |||||||||    
8033529 aaaatgaaagg 8033539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 5 - 189
Target Start/End: Complemental strand, 22945128 - 22944944
Alignment:
5 ttgataaacctgaatttgtctctcaatttagacctattgctttatgtaatgttatttataagataatttctaaggttattgtcaacagaatcaagccgtt 104  Q
    ||||||| ||||| ||||| |||||||||||||||||| ||||||| |||||||||||||| || |||||||| |||||||| || || || ||||| ||    
22945128 ttgataagcctgattttgtttctcaatttagacctatttctttatgcaatgttatttataaaattatttctaaagttattgttaataggattaagccttt 22945029  T
105 gcttgatggtattatttctccatatcagtccagttttattccaggtagaagtatccaccataatattattgtggctcaggagatg 189  Q
    |||||||  ||||||||| || ||||| || ||||||||||| ||| | || ||||| |||||||||||||| ||||| ||||||    
22945028 gcttgataatattatttcaccttatcaatctagttttattccgggtcgtagcatccatcataatattattgtagctcaagagatg 22944944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 40 - 203
Target Start/End: Original strand, 1610346 - 1610509
Alignment:
40 attgctttatgtaatgttatttataagataatttctaaggttattgtcaacagaatcaagccgttgcttgatggtattatttctccatatcagtccagtt 139  Q
    |||||||| |||||||  | |||||| || ||| ||||||||||||| || |||||||| || ||| | ||||| || |||||||| ||||| || || |    
1610346 attgctttgtgtaatgggacttataacatcattactaaggttattgttaatagaatcaaacctttgttagatggaatcatttctccttatcaatctagct 1610445  T
140 ttattccaggtagaagtatccaccataatattattgtggctcaggagatggtacattccatggc 203  Q
    ||||| ||||  |||  |||||||||||||| |||||||||||| |||||||||||||||||||    
1610446 ttatttcaggacgaacaatccaccataatatcattgtggctcagaagatggtacattccatggc 1610509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 7 - 191
Target Start/End: Original strand, 46426258 - 46426442
Alignment:
7 gataaacctgaatttgtctctcaatttagacctattgctttatgtaatgttatttataagataatttctaaggttattgtcaacagaatcaagccgttgc 106  Q
    ||||||||| ||||||| |  |||||||| |||||| |  | ||||||||||| ||||| |||||||||||||| ||||| ||||| || ||||| ||||    
46426258 gataaacctaaatttgtttaacaatttaggcctatttccctttgtaatgttatctataaaataatttctaaggtgattgttaacaggattaagcctttgc 46426357  T
107 ttgatggtattatttctccatatcagtccagttttattccaggtagaagtatccaccataatattattgtggctcaggagatggt 191  Q
    ||||| | ||||||| |||||| ||||| ||||||||||||||| |||| || ||||| ||||||||||||||| | ||||||||    
46426358 ttgatagaattatttttccataccagtctagttttattccaggtcgaagcattcaccacaatattattgtggctaaagagatggt 46426442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 7 - 191
Target Start/End: Complemental strand, 54814746 - 54814562
Alignment:
7 gataaacctgaatttgtctctcaatttagacctattgctttatgtaatgttatttataagataatttctaaggttattgtcaacagaatcaagccgttgc 106  Q
    ||||||||||||||||| || |||||||  |||||| |  | ||||||| ||| ||||| |||||||||||||| ||||| ||||  || ||||| ||||    
54814746 gataaacctgaatttgtttcacaatttaagcctatttccctttgtaatggtatatataaaataatttctaaggtcattgttaacatgattaagcctttgc 54814647  T
107 ttgatggtattatttctccatatcagtccagttttattccaggtagaagtatccaccataatattattgtggctcaggagatggt 191  Q
    ||||| | |||||||||||||| ||||| ||||||||||||||| |||| || ||||| ||||||||| ||||| | ||||||||    
54814646 ttgatagaattatttctccataccagtctagttttattccaggtcgaagcattcaccacaatattattatggctaaagagatggt 54814562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 34567098 - 34567147
Alignment:
98 agccgttgcttgatggtattatttctccatatcagtccagttttattcca 147  Q
    ||||||||||||||||||||||||||||||| ||||| | ||||||||||    
34567098 agccgttgcttgatggtattatttctccataccagtctaattttattcca 34567147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University