View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6875A_low_195 (Length: 249)
Name: NF6875A_low_195
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_195 |
 | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0003 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 15 - 233
Target Start/End: Complemental strand, 9192 - 8977
Alignment:
| Q |
15 |
gaaaaagaataggaaccggttactaataattctcccacgaacttatttcctaacaatatgggacatagtggaaaatgggattgggaagaaacgtgggatg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9192 |
gaaaaagaataggaaccggttactaataattctcccactaacttatttcctaacaatatggaacatagtggaaaatgggattgggaagaaacgt-ggatc |
9094 |
T |
|
| Q |
115 |
tttatttccacaggtcaatcacttcctttgctctatgcttccttttgttttcctactttcttgctaatctgattatatattactctaataaattctagct |
214 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||| |
|
|
| T |
9093 |
tttatttccacacgccaatcacttcctttgctctatgcttccttttgttttcctactttcttgctaatcttat--tatattactctaataaatactagct |
8996 |
T |
|
| Q |
215 |
agtaatatctagtggcaca |
233 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
8995 |
agtaatatctagtggcaca |
8977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 15 - 233
Target Start/End: Complemental strand, 16420480 - 16420265
Alignment:
| Q |
15 |
gaaaaagaataggaaccggttactaataattctcccacgaacttatttcctaacaatatgggacatagtggaaaatgggattgggaagaaacgtgggatg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
16420480 |
gaaaaagaataggaaccggttactaataattctcccactaacttatttcctaacaatatggaacatagtggaaaatgggattgggaagaaacgt-ggatc |
16420382 |
T |
|
| Q |
115 |
tttatttccacaggtcaatcacttcctttgctctatgcttccttttgttttcctactttcttgctaatctgattatatattactctaataaattctagct |
214 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||| |
|
|
| T |
16420381 |
tttatttccacacgccaatcacttcctttgctctatgcttccttttgttttcctactttcttgctaatcttat--tatattactctaataaatactagct |
16420284 |
T |
|
| Q |
215 |
agtaatatctagtggcaca |
233 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
16420283 |
agtaatatctagtggcaca |
16420265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 5538285 - 5538504
Alignment:
| Q |
15 |
gaaaaagaataggaaccggttactaataattctcccacgaacttatttcctaacaatatgggacatagtggaaaatgggattgggaagaaacgtgggatg |
114 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5538285 |
gaaaaggaataggaactggttactaataattctcccactagcttatttcctaacaatatgggacatagtggaaaatgggattgggaagaaacgt-ggatg |
5538383 |
T |
|
| Q |
115 |
tttatttccacaggtcaatcacttcc-tttgctctatgcttccttttgttttcctactttcttgctaatctgat--tatatattactctaataaattcta |
211 |
Q |
| |
|
|||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||| |
|
|
| T |
5538384 |
tttatttccacacg-caatcacttccttttgctctatgcttccttttgttttcctactttcttgctaatcttattatatatattactctaataaatacta |
5538482 |
T |
|
| Q |
212 |
gctagtaatatctagtggcaca |
233 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
5538483 |
gctagtaatatctaatggcaca |
5538504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 54 - 207
Target Start/End: Complemental strand, 19932449 - 19932297
Alignment:
| Q |
54 |
aacttatttcctaacaatatgggacatagtggaaaatgggattgggaagaaacgtgggatgtttatttccacaggtcaatcacttcctttgctctatgct |
153 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||| ||||||||| |
|
|
| T |
19932449 |
aacttatttcctaaaaatatggaacatagtggaaaatgggattgggaagaaacgtgg-atgtttatttccactagtcaatcagttccttttctctatgct |
19932351 |
T |
|
| Q |
154 |
tccttttgttttcctactttcttgctaatctgattatatattactctaataaat |
207 |
Q |
| |
|
|||||||| ||||||||||| |||||||||| ||||||||||||| |||||||| |
|
|
| T |
19932350 |
tccttttgctttcctactttattgctaatcttattatatattactttaataaat |
19932297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 9e-48; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 54 - 207
Target Start/End: Complemental strand, 18901668 - 18901509
Alignment:
| Q |
54 |
aacttatttcctaacaatatgggacatagtggaaaatgggattgggaagaaacgtggg------atgtttatttccacaggtcaatcacttcctttgctc |
147 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||| ||| |
|
|
| T |
18901668 |
aacttatttcctaaaaatatggaacatagtggaaaatgggattgggaagaaacgtggatgtttaatgtttatttccaccagtcaatcagttccttttctc |
18901569 |
T |
|
| Q |
148 |
tatgcttccttttgttttcctactttcttgctaatctgattatatattactctaataaat |
207 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
18901568 |
tatgcttccttttgctttcctactttcttgctaatcttattatatattactttaataaat |
18901509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 54 - 108
Target Start/End: Original strand, 51784718 - 51784772
Alignment:
| Q |
54 |
aacttatttcctaacaatatgggacatagtggaaaatgggattgggaagaaacgt |
108 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
51784718 |
aacttatttcctaaaaatatggaacatagtggaaaatgggattgggaagaaacgt |
51784772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 233
Target Start/End: Complemental strand, 18901487 - 18901449
Alignment:
| Q |
195 |
tactctaataaattctagctagtaatatctagtggcaca |
233 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
18901487 |
tactctaataaatactagctagtaatatctagtgtcaca |
18901449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 207
Target Start/End: Original strand, 51784794 - 51784832
Alignment:
| Q |
169 |
actttcttgctaatctgattatatattactctaataaat |
207 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
51784794 |
actttcttgctaatcttattatatattactttaataaat |
51784832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 15 - 193
Target Start/End: Original strand, 37940333 - 37940512
Alignment:
| Q |
15 |
gaaaaagaataggaaccggttacta--ataattctcccacgaacttatttcctaacaatatgggacatagtggaaaatgggattgggaagaaacgtggga |
112 |
Q |
| |
|
|||||||||||||||||||||| || |||| | ||| |||||||||||||| ||||||| ||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
37940333 |
gaaaaagaataggaaccggttattataataacattgtcactaacttatttcctaaaaatatggaacatagtggaaaatgagattgggaagaaacgt-gga |
37940431 |
T |
|
| Q |
113 |
tgtttatttccacaggtcaatcacttcctttgctctatgcttccttttgttttcctactttcttgctaatctgattatata |
193 |
Q |
| |
|
||||||||||||| || ||||| ||||||| ||||||||| ||||| || ||||||||||||||||||| |||||||| |
|
|
| T |
37940432 |
tgtttatttccactagttaatcagttcctttttcctatgcttctttttgcttacctactttcttgctaatcttattatata |
37940512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 195 - 233
Target Start/End: Original strand, 37940550 - 37940588
Alignment:
| Q |
195 |
tactctaataaattctagctagtaatatctagtggcaca |
233 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37940550 |
tactctaataaatactagctagtaatatctagtggcaca |
37940588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University